
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:41 04/04/2011

Input data from file "591-tomodel-phylip/chr3_454.phylip" (7 taxa, 1048 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3433.9337	6907.8675	0.6669	0.6669
GTRIG	21	-3433.9080	6909.8159	0.2517	0.9186
GTRI	20	-3436.1417	6912.2834	0.0733	0.9919
HKYG	16	-3442.8110	6917.6221	0.0051	0.9970
HKYIG	17	-3442.8139	6919.6277	0.0019	0.9989
HKYI	16	-3444.3295	6920.6589	0.0011	1.0000
GTR	19	-3471.7679	6981.5357	0.0000	1.0000
HKY	15	-3480.6144	6991.2288	0.0000	1.0000
K2PG	13	-3488.8346	7003.6692	0.0000	1.0000
K2PIG	14	-3488.8138	7005.6276	0.0000	1.0000
K2PI	13	-3490.0728	7006.1455	0.0000	1.0000
SYMG	17	-3487.5402	7009.0804	0.0000	1.0000
SYMIG	18	-3487.5048	7011.0096	0.0000	1.0000
SYMI	17	-3488.9623	7011.9246	0.0000	1.0000
K2P	12	-3529.2069	7082.4137	0.0000	1.0000
SYM	16	-3527.1774	7086.3548	0.0000	1.0000
F81G	15	-3546.5327	7123.0655	0.0000	1.0000
F81I	15	-3547.0831	7124.1663	0.0000	1.0000
F81IG	16	-3546.5336	7125.0671	0.0000	1.0000
JC69G	12	-3582.4768	7188.9535	0.0000	1.0000
F81	14	-3580.6802	7189.3604	0.0000	1.0000
JC69I	12	-3582.9114	7189.8227	0.0000	1.0000
JC69IG	13	-3582.4041	7190.8081	0.0000	1.0000
JC69	11	-3618.0816	7258.1632	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3442.8110	6996.8963	0.7954	0.7954
HKYI	16	-3444.3295	6999.9332	0.1742	0.9696
HKYIG	17	-3442.8139	7003.8566	0.0245	0.9941
GTRG	20	-3433.9337	7006.9603	0.0052	0.9993
GTRI	20	-3436.1417	7011.3761	0.0006	0.9998
GTRIG	21	-3433.9080	7013.8633	0.0002	1.0000
HKY	15	-3480.6144	7065.5484	0.0000	1.0000
K2PG	13	-3488.8346	7068.0795	0.0000	1.0000
K2PI	13	-3490.0728	7070.5558	0.0000	1.0000
K2PIG	14	-3488.8138	7074.9925	0.0000	1.0000
GTR	19	-3471.7679	7075.6739	0.0000	1.0000
SYMG	17	-3487.5402	7093.3093	0.0000	1.0000
SYMI	17	-3488.9623	7096.1535	0.0000	1.0000
SYMIG	18	-3487.5048	7100.1931	0.0000	1.0000
K2P	12	-3529.2069	7141.8694	0.0000	1.0000
SYM	16	-3527.1774	7165.6290	0.0000	1.0000
F81G	15	-3546.5327	7197.3851	0.0000	1.0000
F81I	15	-3547.0831	7198.4859	0.0000	1.0000
F81IG	16	-3546.5336	7204.3413	0.0000	1.0000
JC69G	12	-3582.4768	7248.4092	0.0000	1.0000
JC69I	12	-3582.9114	7249.2784	0.0000	1.0000
JC69IG	13	-3582.4041	7255.2184	0.0000	1.0000
F81	14	-3580.6802	7258.7253	0.0000	1.0000
JC69	11	-3618.0816	7312.6642	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_454.phylip = 1 - 1048;
 Partition Dummy = 1:591-tomodel-phylip/chr3_454.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_454.phylip = 1 - 1048;
 Partition Dummy = 1:591-tomodel-phylip/chr3_454.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_454.phylip = 1 - 1048;
 Partition Dummy = 1:591-tomodel-phylip/chr3_454.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

