
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:40 04/04/2011

Input data from file "591-tomodel-phylip/chr3_338.phylip" (7 taxa, 639 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1748.4722	3538.3035	0.4131	0.4131
GTRIG	21	-1747.8620	3539.2216	0.2610	0.6741
HKYG	16	-1753.8885	3540.6516	0.1277	0.8017
GTRI	20	-1750.0211	3541.4015	0.0878	0.8895
HKYIG	17	-1753.3492	3541.6839	0.0762	0.9657
HKYI	16	-1755.2030	3543.2806	0.0343	1.0000
K2PG	13	-1791.5005	3609.5834	0.0000	1.0000
K2PIG	14	-1790.8743	3610.4217	0.0000	1.0000
K2PI	13	-1792.7891	3612.1606	0.0000	1.0000
HKY	15	-1791.0791	3612.9287	0.0000	1.0000
GTR	19	-1786.9002	3613.0281	0.0000	1.0000
SYMG	17	-1790.1135	3615.2125	0.0000	1.0000
SYMIG	18	-1789.4429	3615.9891	0.0000	1.0000
SYMI	17	-1791.4465	3617.8784	0.0000	1.0000
F81G	15	-1803.3164	3637.4032	0.0000	1.0000
F81IG	16	-1803.0200	3638.9146	0.0000	1.0000
F81I	15	-1804.3507	3639.4718	0.0000	1.0000
K2P	12	-1827.6282	3679.7548	0.0000	1.0000
SYM	16	-1826.2543	3685.3833	0.0000	1.0000
JC69G	12	-1833.1262	3690.7508	0.0000	1.0000
JC69IG	13	-1832.7857	3692.1539	0.0000	1.0000
JC69I	12	-1834.1312	3692.7608	0.0000	1.0000
F81	14	-1837.3748	3703.4227	0.0000	1.0000
JC69	11	-1867.0928	3756.6067	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1748.4722	3536.9443	0.4255	0.4255
GTRIG	21	-1747.8620	3537.7241	0.2881	0.7136
HKYG	16	-1753.8885	3539.7770	0.1032	0.8168
GTRI	20	-1750.0211	3540.0423	0.0904	0.9072
HKYIG	17	-1753.3492	3540.6984	0.0651	0.9723
HKYI	16	-1755.2030	3542.4060	0.0277	1.0000
K2PG	13	-1791.5005	3609.0010	0.0000	1.0000
K2PIG	14	-1790.8743	3609.7486	0.0000	1.0000
K2PI	13	-1792.7891	3611.5782	0.0000	1.0000
GTR	19	-1786.9002	3611.8003	0.0000	1.0000
HKY	15	-1791.0791	3612.1583	0.0000	1.0000
SYMG	17	-1790.1135	3614.2270	0.0000	1.0000
SYMIG	18	-1789.4429	3614.8859	0.0000	1.0000
SYMI	17	-1791.4465	3616.8929	0.0000	1.0000
F81G	15	-1803.3164	3636.6327	0.0000	1.0000
F81IG	16	-1803.0200	3638.0400	0.0000	1.0000
F81I	15	-1804.3507	3638.7014	0.0000	1.0000
K2P	12	-1827.6282	3679.2564	0.0000	1.0000
SYM	16	-1826.2543	3684.5087	0.0000	1.0000
JC69G	12	-1833.1262	3690.2524	0.0000	1.0000
JC69IG	13	-1832.7857	3691.5715	0.0000	1.0000
JC69I	12	-1834.1312	3692.2624	0.0000	1.0000
F81	14	-1837.3748	3702.7496	0.0000	1.0000
JC69	11	-1867.0928	3756.1856	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1753.8885	3611.1355	0.7479	0.7479
HKYI	16	-1755.2030	3613.7645	0.2009	0.9487
HKYIG	17	-1753.3492	3616.5168	0.0507	0.9995
GTRG	20	-1748.4722	3626.1424	0.0004	0.9999
GTRI	20	-1750.0211	3629.2403	0.0001	1.0000
GTRIG	21	-1747.8620	3631.3821	0.0000	1.0000
K2PG	13	-1791.5005	3666.9798	0.0000	1.0000
K2PI	13	-1792.7891	3669.5570	0.0000	1.0000
K2PIG	14	-1790.8743	3672.1872	0.0000	1.0000
HKY	15	-1791.0791	3679.0568	0.0000	1.0000
SYMG	17	-1790.1135	3690.0453	0.0000	1.0000
SYMI	17	-1791.4465	3692.7113	0.0000	1.0000
SYMIG	18	-1789.4429	3695.1642	0.0000	1.0000
GTR	19	-1786.9002	3696.5385	0.0000	1.0000
F81G	15	-1803.3164	3703.5313	0.0000	1.0000
F81I	15	-1804.3507	3705.5999	0.0000	1.0000
F81IG	16	-1803.0200	3709.3985	0.0000	1.0000
K2P	12	-1827.6282	3732.7753	0.0000	1.0000
JC69G	12	-1833.1262	3743.7712	0.0000	1.0000
JC69I	12	-1834.1312	3745.7813	0.0000	1.0000
JC69IG	13	-1832.7857	3749.5502	0.0000	1.0000
SYM	16	-1826.2543	3755.8672	0.0000	1.0000
F81	14	-1837.3748	3765.1883	0.0000	1.0000
JC69	11	-1867.0928	3805.2445	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_338.phylip = 1 - 639;
 Partition Dummy = 1:591-tomodel-phylip/chr3_338.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_338.phylip = 1 - 639;
 Partition Dummy = 1:591-tomodel-phylip/chr3_338.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_338.phylip = 1 - 639;
 Partition Dummy = 1:591-tomodel-phylip/chr3_338.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

