
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:39 04/04/2011

Input data from file "591-tomodel-phylip/chr3_3177.phylip" (7 taxa, 1124 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-4312.6440	8665.2881	0.7230	0.7230
GTRIG	21	-4312.6439	8667.2878	0.2660	0.9890
HKYG	16	-4321.3157	8674.6314	0.0068	0.9957
HKYIG	17	-4321.3157	8676.6314	0.0025	0.9982
GTRI	20	-4318.6698	8677.3397	0.0017	1.0000
HKYI	16	-4326.8656	8685.7312	0.0000	1.0000
GTR	19	-4347.2296	8732.4593	0.0000	1.0000
HKY	15	-4354.9316	8739.8631	0.0000	1.0000
K2PG	13	-4370.9849	8767.9698	0.0000	1.0000
K2PIG	14	-4370.9850	8769.9700	0.0000	1.0000
SYMG	17	-4369.4604	8772.9209	0.0000	1.0000
SYMIG	18	-4369.4605	8774.9209	0.0000	1.0000
K2PI	13	-4376.0974	8778.1949	0.0000	1.0000
SYMI	17	-4374.3742	8782.7483	0.0000	1.0000
K2P	12	-4405.5605	8835.1210	0.0000	1.0000
SYM	16	-4404.2794	8840.5589	0.0000	1.0000
F81G	15	-4438.4208	8906.8415	0.0000	1.0000
F81IG	16	-4438.4208	8908.8416	0.0000	1.0000
F81I	15	-4441.1946	8912.3891	0.0000	1.0000
F81	14	-4466.1770	8960.3541	0.0000	1.0000
JC69G	12	-4476.5301	8977.0603	0.0000	1.0000
JC69IG	13	-4476.5300	8979.0601	0.0000	1.0000
JC69I	12	-4479.3329	8982.6658	0.0000	1.0000
JC69	11	-4505.1375	9032.2750	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-4321.3157	8755.0257	0.9629	0.9629
HKYIG	17	-4321.3157	8762.0504	0.0287	0.9917
GTRG	20	-4312.6440	8765.7811	0.0044	0.9961
HKYI	16	-4326.8656	8766.1256	0.0037	0.9999
GTRIG	21	-4312.6439	8772.8055	0.0001	1.0000
GTRI	20	-4318.6698	8777.8326	0.0000	1.0000
HKY	15	-4354.9316	8815.2329	0.0000	1.0000
GTR	19	-4347.2296	8827.9276	0.0000	1.0000
K2PG	13	-4370.9849	8833.2903	0.0000	1.0000
K2PIG	14	-4370.9850	8840.3151	0.0000	1.0000
K2PI	13	-4376.0974	8843.5153	0.0000	1.0000
SYMG	17	-4369.4604	8858.3399	0.0000	1.0000
SYMIG	18	-4369.4605	8865.3646	0.0000	1.0000
SYMI	17	-4374.3742	8868.1674	0.0000	1.0000
K2P	12	-4405.5605	8895.4168	0.0000	1.0000
SYM	16	-4404.2794	8920.9533	0.0000	1.0000
F81G	15	-4438.4208	8982.2112	0.0000	1.0000
F81I	15	-4441.1946	8987.7588	0.0000	1.0000
F81IG	16	-4438.4208	8989.2360	0.0000	1.0000
F81	14	-4466.1770	9030.6991	0.0000	1.0000
JC69G	12	-4476.5301	9037.3561	0.0000	1.0000
JC69I	12	-4479.3329	9042.9616	0.0000	1.0000
JC69IG	13	-4476.5300	9044.3805	0.0000	1.0000
JC69	11	-4505.1375	9087.5461	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_3177.phylip = 1 - 1124;
 Partition Dummy = 1:591-tomodel-phylip/chr3_3177.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_3177.phylip = 1 - 1124;
 Partition Dummy = 1:591-tomodel-phylip/chr3_3177.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_3177.phylip = 1 - 1124;
 Partition Dummy = 1:591-tomodel-phylip/chr3_3177.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

