
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:37 04/04/2011

Input data from file "591-tomodel-phylip/chr3_300.phylip" (7 taxa, 673 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1814.0421	3669.3726	0.4148	0.4148
GTRI	20	-1814.7803	3670.8489	0.1983	0.6131
GTRIG	21	-1813.9832	3671.3859	0.1516	0.7647
HKYG	16	-1819.4575	3671.7442	0.1267	0.8914
HKYI	16	-1820.1891	3673.2074	0.0610	0.9524
HKYIG	17	-1819.3836	3673.7015	0.0476	1.0000
GTR	19	-1835.0895	3709.3428	0.0000	1.0000
HKY	15	-1840.2548	3711.2401	0.0000	1.0000
K2PG	13	-1851.8362	3730.2248	0.0000	1.0000
K2PI	13	-1852.6501	3731.8526	0.0000	1.0000
K2PIG	14	-1851.7332	3732.1046	0.0000	1.0000
SYMG	17	-1849.5008	3733.9360	0.0000	1.0000
SYMI	17	-1850.3600	3735.6543	0.0000	1.0000
SYMIG	18	-1849.3899	3735.8258	0.0000	1.0000
K2P	12	-1873.0142	3770.5011	0.0000	1.0000
SYM	16	-1870.3730	3773.5752	0.0000	1.0000
F81G	15	-1872.6135	3775.9577	0.0000	1.0000
F81I	15	-1873.0901	3776.9107	0.0000	1.0000
F81IG	16	-1872.6060	3778.0413	0.0000	1.0000
F81	14	-1891.3011	3811.2405	0.0000	1.0000
JC69G	12	-1900.0753	3824.6234	0.0000	1.0000
JC69I	12	-1900.5851	3825.6429	0.0000	1.0000
JC69IG	13	-1900.0516	3826.6556	0.0000	1.0000
JC69	11	-1918.7816	3859.9626	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1814.0421	3668.0842	0.4303	0.4303
GTRI	20	-1814.7803	3669.5606	0.2057	0.6360
GTRIG	21	-1813.9832	3669.9665	0.1679	0.8038
HKYG	16	-1819.4575	3670.9149	0.1045	0.9083
HKYI	16	-1820.1891	3672.3782	0.0503	0.9586
HKYIG	17	-1819.3836	3672.7671	0.0414	1.0000
GTR	19	-1835.0895	3708.1789	0.0000	1.0000
HKY	15	-1840.2548	3710.5095	0.0000	1.0000
K2PG	13	-1851.8362	3729.6724	0.0000	1.0000
K2PI	13	-1852.6501	3731.3002	0.0000	1.0000
K2PIG	14	-1851.7332	3731.4663	0.0000	1.0000
SYMG	17	-1849.5008	3733.0016	0.0000	1.0000
SYMI	17	-1850.3600	3734.7199	0.0000	1.0000
SYMIG	18	-1849.3899	3734.7799	0.0000	1.0000
K2P	12	-1873.0142	3770.0284	0.0000	1.0000
SYM	16	-1870.3730	3772.7460	0.0000	1.0000
F81G	15	-1872.6135	3775.2271	0.0000	1.0000
F81I	15	-1873.0901	3776.1801	0.0000	1.0000
F81IG	16	-1872.6060	3777.2121	0.0000	1.0000
F81	14	-1891.3011	3810.6022	0.0000	1.0000
JC69G	12	-1900.0753	3824.1506	0.0000	1.0000
JC69I	12	-1900.5851	3825.1702	0.0000	1.0000
JC69IG	13	-1900.0516	3826.1032	0.0000	1.0000
JC69	11	-1918.7816	3859.5632	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1819.4575	3743.1028	0.6564	0.6564
HKYI	16	-1820.1891	3744.5661	0.3158	0.9723
HKYIG	17	-1819.3836	3749.4668	0.0272	0.9995
GTRG	20	-1814.0421	3758.3191	0.0003	0.9998
GTRI	20	-1814.7803	3759.7955	0.0002	1.0000
GTRIG	21	-1813.9832	3764.7132	0.0000	1.0000
HKY	15	-1840.2548	3778.1857	0.0000	1.0000
K2PG	13	-1851.8362	3788.3251	0.0000	1.0000
K2PI	13	-1852.6501	3789.9529	0.0000	1.0000
GTR	19	-1835.0895	3793.9021	0.0000	1.0000
K2PIG	14	-1851.7332	3794.6308	0.0000	1.0000
SYMG	17	-1849.5008	3809.7013	0.0000	1.0000
SYMI	17	-1850.3600	3811.4196	0.0000	1.0000
SYMIG	18	-1849.3899	3815.9913	0.0000	1.0000
K2P	12	-1873.0142	3824.1693	0.0000	1.0000
F81G	15	-1872.6135	3842.9033	0.0000	1.0000
F81I	15	-1873.0901	3843.8563	0.0000	1.0000
SYM	16	-1870.3730	3844.9339	0.0000	1.0000
F81IG	16	-1872.6060	3849.4000	0.0000	1.0000
F81	14	-1891.3011	3873.7667	0.0000	1.0000
JC69G	12	-1900.0753	3878.2916	0.0000	1.0000
JC69I	12	-1900.5851	3879.3111	0.0000	1.0000
JC69IG	13	-1900.0516	3884.7559	0.0000	1.0000
JC69	11	-1918.7816	3909.1924	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_300.phylip = 1 - 673;
 Partition Dummy = 1:591-tomodel-phylip/chr3_300.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_300.phylip = 1 - 673;
 Partition Dummy = 1:591-tomodel-phylip/chr3_300.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_300.phylip = 1 - 673;
 Partition Dummy = 1:591-tomodel-phylip/chr3_300.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

