
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:36 04/04/2011

Input data from file "591-tomodel-phylip/chr3_292.phylip" (7 taxa, 989 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2934.1147	5908.2294	0.6891	0.6891
GTRIG	21	-2933.9844	5909.9687	0.2888	0.9778
GTRI	20	-2937.5521	5915.1041	0.0222	1.0000
HKYG	16	-2951.8878	5935.7756	0.0000	1.0000
HKYIG	17	-2952.0748	5938.1497	0.0000	1.0000
HKYI	16	-2954.6008	5941.2017	0.0000	1.0000
GTR	19	-2967.4296	5972.8591	0.0000	1.0000
HKY	15	-2984.3862	5998.7724	0.0000	1.0000
SYMG	17	-2993.2843	6020.5687	0.0000	1.0000
SYMIG	18	-2993.1840	6022.3681	0.0000	1.0000
SYMI	17	-2995.0657	6024.1315	0.0000	1.0000
K2PG	13	-3001.4554	6028.9107	0.0000	1.0000
K2PIG	14	-3001.3876	6030.7753	0.0000	1.0000
K2PI	13	-3002.9760	6031.9519	0.0000	1.0000
F81G	15	-3012.4446	6054.8892	0.0000	1.0000
F81IG	16	-3012.4369	6056.8738	0.0000	1.0000
F81I	15	-3013.7023	6057.4046	0.0000	1.0000
SYM	16	-3028.2651	6088.5302	0.0000	1.0000
K2P	12	-3036.5728	6097.1457	0.0000	1.0000
F81	14	-3044.1780	6116.3561	0.0000	1.0000
JC69G	12	-3052.8097	6129.6194	0.0000	1.0000
JC69I	12	-3053.7828	6131.5657	0.0000	1.0000
JC69IG	13	-3052.8163	6131.6327	0.0000	1.0000
JC69	11	-3086.1748	6194.3495	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-2934.1147	6006.1633	0.9184	0.9184
GTRIG	21	-2933.9844	6012.7993	0.0333	0.9517
GTRI	20	-2937.5521	6013.0380	0.0295	0.9812
HKYG	16	-2951.8878	6014.1227	0.0172	0.9984
HKYI	16	-2954.6008	6019.5488	0.0011	0.9995
HKYIG	17	-2952.0748	6021.3935	0.0005	1.0000
GTR	19	-2967.4296	6065.8963	0.0000	1.0000
HKY	15	-2984.3862	6072.2228	0.0000	1.0000
K2PG	13	-3001.4554	6092.5678	0.0000	1.0000
K2PI	13	-3002.9760	6095.6089	0.0000	1.0000
K2PIG	14	-3001.3876	6099.3290	0.0000	1.0000
SYMG	17	-2993.2843	6103.8125	0.0000	1.0000
SYMI	17	-2995.0657	6107.3753	0.0000	1.0000
SYMIG	18	-2993.1840	6110.5086	0.0000	1.0000
F81G	15	-3012.4446	6128.3396	0.0000	1.0000
F81I	15	-3013.7023	6130.8550	0.0000	1.0000
F81IG	16	-3012.4369	6135.2209	0.0000	1.0000
K2P	12	-3036.5728	6155.9060	0.0000	1.0000
SYM	16	-3028.2651	6166.8773	0.0000	1.0000
F81	14	-3044.1780	6184.9098	0.0000	1.0000
JC69G	12	-3052.8097	6188.3797	0.0000	1.0000
JC69I	12	-3053.7828	6190.3260	0.0000	1.0000
JC69IG	13	-3052.8163	6195.2897	0.0000	1.0000
JC69	11	-3086.1748	6248.2131	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_292.phylip = 1 - 989;
 Partition Dummy = 1:591-tomodel-phylip/chr3_292.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_292.phylip = 1 - 989;
 Partition Dummy = 1:591-tomodel-phylip/chr3_292.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_292.phylip = 1 - 989;
 Partition Dummy = 1:591-tomodel-phylip/chr3_292.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

