
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:35 04/04/2011

Input data from file "591-tomodel-phylip/chr3_2726.phylip" (7 taxa, 958 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-3110.2406	6252.4811	0.4872	0.4872
HKYI	16	-3111.0822	6254.1644	0.2100	0.6972
HKYIG	17	-3110.2528	6254.5056	0.1771	0.8743
GTRG	20	-3108.1898	6256.3797	0.0694	0.9436
GTRI	20	-3108.9892	6257.9784	0.0312	0.9748
GTRIG	21	-3108.2031	6258.4061	0.0252	1.0000
HKY	15	-3122.3467	6274.6934	0.0000	1.0000
GTR	19	-3120.1276	6278.2551	0.0000	1.0000
SYMG	17	-3153.5934	6341.1868	0.0000	1.0000
SYMI	17	-3154.3778	6342.7556	0.0000	1.0000
SYMIG	18	-3153.6048	6343.2096	0.0000	1.0000
K2PG	13	-3159.7767	6345.5534	0.0000	1.0000
K2PI	13	-3160.5469	6347.0938	0.0000	1.0000
K2PIG	14	-3159.7806	6347.5611	0.0000	1.0000
SYM	16	-3165.7071	6363.4142	0.0000	1.0000
K2P	12	-3171.4163	6366.8326	0.0000	1.0000
F81G	15	-3186.1242	6402.2485	0.0000	1.0000
F81I	15	-3186.7630	6403.5260	0.0000	1.0000
F81IG	16	-3186.1363	6404.2726	0.0000	1.0000
F81	14	-3196.2209	6420.4417	0.0000	1.0000
JC69G	12	-3226.4570	6476.9140	0.0000	1.0000
JC69I	12	-3227.0851	6478.1701	0.0000	1.0000
JC69IG	13	-3226.4621	6478.9242	0.0000	1.0000
JC69	11	-3236.7324	6495.4647	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3110.2406	6330.3187	0.6835	0.6835
HKYI	16	-3111.0822	6332.0019	0.2946	0.9781
HKYIG	17	-3110.2528	6337.2080	0.0218	0.9999
HKY	15	-3122.3467	6347.6661	0.0001	1.0000
GTRG	20	-3108.1898	6353.6766	0.0000	1.0000
GTRI	20	-3108.9892	6355.2754	0.0000	1.0000
GTRIG	21	-3108.2031	6360.5679	0.0000	1.0000
GTR	19	-3120.1276	6370.6872	0.0000	1.0000
K2PG	13	-3159.7767	6408.7964	0.0000	1.0000
K2PI	13	-3160.5469	6410.3368	0.0000	1.0000
K2PIG	14	-3159.7806	6415.6690	0.0000	1.0000
SYMG	17	-3153.5934	6423.8892	0.0000	1.0000
K2P	12	-3171.4163	6425.2108	0.0000	1.0000
SYMI	17	-3154.3778	6425.4581	0.0000	1.0000
SYMIG	18	-3153.6048	6430.7769	0.0000	1.0000
SYM	16	-3165.7071	6441.2517	0.0000	1.0000
F81G	15	-3186.1242	6475.2212	0.0000	1.0000
F81I	15	-3186.7630	6476.4988	0.0000	1.0000
F81IG	16	-3186.1363	6482.1101	0.0000	1.0000
F81	14	-3196.2209	6488.5496	0.0000	1.0000
JC69G	12	-3226.4570	6535.2922	0.0000	1.0000
JC69I	12	-3227.0851	6536.5483	0.0000	1.0000
JC69IG	13	-3226.4621	6542.1672	0.0000	1.0000
JC69	11	-3236.7324	6548.9781	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_2726.phylip = 1 - 958;
 Partition Dummy = 1:591-tomodel-phylip/chr3_2726.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_2726.phylip = 1 - 958;
 Partition Dummy = 1:591-tomodel-phylip/chr3_2726.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_2726.phylip = 1 - 958;
 Partition Dummy = 1:591-tomodel-phylip/chr3_2726.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

