
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:37 04/04/2011

Input data from file "591-tomodel-phylip/chr3_17712.phylip" (7 taxa, 660 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2450.2294	4941.7733	0.5790	0.5790
GTRIG	21	-2450.1535	4943.7554	0.2149	0.7940
GTRI	20	-2451.9408	4945.1961	0.1046	0.8985
HKYG	16	-2456.6671	4946.1802	0.0639	0.9625
HKYIG	17	-2456.6026	4948.1585	0.0238	0.9862
HKYI	16	-2458.2039	4949.2538	0.0138	1.0000
GTR	19	-2473.6026	4986.3926	0.0000	1.0000
HKY	15	-2481.2698	4993.2849	0.0000	1.0000
SYMG	17	-2497.4928	5029.9388	0.0000	1.0000
K2PG	13	-2501.9383	5030.4401	0.0000	1.0000
SYMIG	18	-2497.4931	5032.0533	0.0000	1.0000
K2PIG	14	-2501.9464	5032.5439	0.0000	1.0000
K2PI	13	-2504.0043	5034.5721	0.0000	1.0000
SYMI	17	-2500.1310	5035.2154	0.0000	1.0000
SYM	16	-2525.0817	5083.0095	0.0000	1.0000
F81G	15	-2527.5339	5085.8132	0.0000	1.0000
F81IG	16	-2527.4710	5087.7881	0.0000	1.0000
F81I	15	-2528.5842	5087.9137	0.0000	1.0000
K2P	12	-2532.2075	5088.8973	0.0000	1.0000
F81	14	-2551.7061	5132.0635	0.0000	1.0000
JC69G	12	-2571.0296	5166.5414	0.0000	1.0000
JC69IG	13	-2571.0254	5168.6143	0.0000	1.0000
JC69I	12	-2572.2881	5169.0585	0.0000	1.0000
JC69	11	-2595.4102	5213.2278	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2450.2294	4940.4587	0.5821	0.5821
GTRIG	21	-2450.1535	4942.3071	0.2310	0.8131
GTRI	20	-2451.9408	4943.8815	0.1051	0.9183
HKYG	16	-2456.6671	4945.3342	0.0509	0.9691
HKYIG	17	-2456.6026	4947.2052	0.0200	0.9891
HKYI	16	-2458.2039	4948.4078	0.0109	1.0000
GTR	19	-2473.6026	4985.2051	0.0000	1.0000
HKY	15	-2481.2698	4992.5396	0.0000	1.0000
SYMG	17	-2497.4928	5028.9856	0.0000	1.0000
K2PG	13	-2501.9383	5029.8767	0.0000	1.0000
SYMIG	18	-2497.4931	5030.9862	0.0000	1.0000
K2PIG	14	-2501.9464	5031.8927	0.0000	1.0000
K2PI	13	-2504.0043	5034.0086	0.0000	1.0000
SYMI	17	-2500.1310	5034.2621	0.0000	1.0000
SYM	16	-2525.0817	5082.1634	0.0000	1.0000
F81G	15	-2527.5339	5085.0678	0.0000	1.0000
F81IG	16	-2527.4710	5086.9420	0.0000	1.0000
F81I	15	-2528.5842	5087.1683	0.0000	1.0000
K2P	12	-2532.2075	5088.4151	0.0000	1.0000
F81	14	-2551.7061	5131.4123	0.0000	1.0000
JC69G	12	-2571.0296	5166.0592	0.0000	1.0000
JC69IG	13	-2571.0254	5168.0508	0.0000	1.0000
JC69I	12	-2572.2881	5168.5763	0.0000	1.0000
JC69	11	-2595.4102	5212.8204	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2456.6671	5017.2100	0.7947	0.7947
HKYI	16	-2458.2039	5020.2836	0.1709	0.9656
HKYIG	17	-2456.6026	5023.5733	0.0330	0.9986
GTRG	20	-2450.2294	5030.3035	0.0011	0.9997
GTRI	20	-2451.9408	5033.7263	0.0002	1.0000
GTRIG	21	-2450.1535	5036.6441	0.0000	1.0000
HKY	15	-2481.2698	5059.9232	0.0000	1.0000
GTR	19	-2473.6026	5070.5577	0.0000	1.0000
K2PG	13	-2501.9383	5088.2758	0.0000	1.0000
K2PI	13	-2504.0043	5092.4078	0.0000	1.0000
K2PIG	14	-2501.9464	5094.7841	0.0000	1.0000
SYMG	17	-2497.4928	5105.3536	0.0000	1.0000
SYMI	17	-2500.1310	5110.6302	0.0000	1.0000
SYMIG	18	-2497.4931	5111.8465	0.0000	1.0000
K2P	12	-2532.2075	5142.3220	0.0000	1.0000
F81G	15	-2527.5339	5152.4514	0.0000	1.0000
SYM	16	-2525.0817	5154.0393	0.0000	1.0000
F81I	15	-2528.5842	5154.5519	0.0000	1.0000
F81IG	16	-2527.4710	5158.8179	0.0000	1.0000
F81	14	-2551.7061	5194.3037	0.0000	1.0000
JC69G	12	-2571.0296	5219.9660	0.0000	1.0000
JC69I	12	-2572.2881	5222.4831	0.0000	1.0000
JC69IG	13	-2571.0254	5226.4499	0.0000	1.0000
JC69	11	-2595.4102	5262.2351	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_17712.phylip = 1 - 660;
 Partition Dummy = 1:591-tomodel-phylip/chr3_17712.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_17712.phylip = 1 - 660;
 Partition Dummy = 1:591-tomodel-phylip/chr3_17712.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_17712.phylip = 1 - 660;
 Partition Dummy = 1:591-tomodel-phylip/chr3_17712.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

