
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:36 04/04/2011

Input data from file "591-tomodel-phylip/chr3_17448.phylip" (7 taxa, 509 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1409.2726	2860.2665	0.4614	0.4614
GTRI	20	-1409.6494	2861.0201	0.3166	0.7780
GTRIG	21	-1409.2542	2862.4058	0.1583	0.9363
HKYG	16	-1416.2836	2865.6728	0.0309	0.9672
HKYI	16	-1416.6402	2866.3860	0.0216	0.9889
HKYIG	17	-1416.2610	2867.7684	0.0108	0.9997
GTR	19	-1417.7387	2875.0316	0.0003	1.0000
HKY	15	-1425.2129	2881.3995	0.0000	1.0000
K2PG	13	-1433.4905	2893.7163	0.0000	1.0000
F81G	15	-1431.6111	2894.1959	0.0000	1.0000
K2PI	13	-1433.8002	2894.3358	0.0000	1.0000
F81I	15	-1431.9422	2894.8580	0.0000	1.0000
K2PIG	14	-1433.4605	2895.7711	0.0000	1.0000
F81IG	16	-1431.5829	2896.2715	0.0000	1.0000
SYMG	17	-1430.8536	2896.9536	0.0000	1.0000
SYMI	17	-1431.0997	2897.4459	0.0000	1.0000
SYMIG	18	-1430.8304	2899.0568	0.0000	1.0000
F81	14	-1440.0214	2908.8930	0.0000	1.0000
K2P	12	-1442.9418	2910.5126	0.0000	1.0000
SYM	16	-1439.4018	2911.9093	0.0000	1.0000
JC69G	12	-1447.5365	2919.7021	0.0000	1.0000
JC69I	12	-1447.7622	2920.1534	0.0000	1.0000
JC69IG	13	-1447.5058	2921.7470	0.0000	1.0000
JC69	11	-1456.4085	2935.3481	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1409.2726	2858.5452	0.4622	0.4622
GTRI	20	-1409.6494	2859.2987	0.3171	0.7793
GTRIG	21	-1409.2542	2860.5084	0.1732	0.9525
HKYG	16	-1416.2836	2864.5671	0.0228	0.9752
HKYI	16	-1416.6402	2865.2803	0.0159	0.9912
HKYIG	17	-1416.2610	2866.5219	0.0086	0.9997
GTR	19	-1417.7387	2873.4774	0.0003	1.0000
HKY	15	-1425.2129	2880.4258	0.0000	1.0000
K2PG	13	-1433.4905	2892.9810	0.0000	1.0000
F81G	15	-1431.6111	2893.2222	0.0000	1.0000
K2PI	13	-1433.8002	2893.6005	0.0000	1.0000
F81I	15	-1431.9422	2893.8843	0.0000	1.0000
K2PIG	14	-1433.4605	2894.9209	0.0000	1.0000
F81IG	16	-1431.5829	2895.1658	0.0000	1.0000
SYMG	17	-1430.8536	2895.7072	0.0000	1.0000
SYMI	17	-1431.0997	2896.1994	0.0000	1.0000
SYMIG	18	-1430.8304	2897.6608	0.0000	1.0000
F81	14	-1440.0214	2908.0428	0.0000	1.0000
K2P	12	-1442.9418	2909.8835	0.0000	1.0000
SYM	16	-1439.4018	2910.8036	0.0000	1.0000
JC69G	12	-1447.5365	2919.0731	0.0000	1.0000
JC69I	12	-1447.7622	2919.5244	0.0000	1.0000
JC69IG	13	-1447.5058	2921.0117	0.0000	1.0000
JC69	11	-1456.4085	2934.8169	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1416.2836	2932.2863	0.5693	0.5693
HKYI	16	-1416.6402	2932.9995	0.3985	0.9679
HKYIG	17	-1416.2610	2938.4736	0.0258	0.9937
GTRG	20	-1409.2726	2943.1942	0.0024	0.9961
HKY	15	-1425.2129	2943.9125	0.0017	0.9978
GTRI	20	-1409.6494	2943.9477	0.0017	0.9995
K2PG	13	-1433.4905	2948.0028	0.0002	0.9997
K2PI	13	-1433.8002	2948.6223	0.0002	0.9999
GTRIG	21	-1409.2542	2949.3898	0.0001	1.0000
GTR	19	-1417.7387	2953.8940	0.0000	1.0000
K2PIG	14	-1433.4605	2954.1752	0.0000	1.0000
F81G	15	-1431.6111	2956.7089	0.0000	1.0000
F81I	15	-1431.9422	2957.3710	0.0000	1.0000
K2P	12	-1442.9418	2960.6729	0.0000	1.0000
F81IG	16	-1431.5829	2962.8850	0.0000	1.0000
F81	14	-1440.0214	2967.2971	0.0000	1.0000
SYMG	17	-1430.8536	2967.6588	0.0000	1.0000
SYMI	17	-1431.0997	2968.1511	0.0000	1.0000
JC69G	12	-1447.5365	2969.8625	0.0000	1.0000
JC69I	12	-1447.7622	2970.3137	0.0000	1.0000
SYMIG	18	-1430.8304	2973.8449	0.0000	1.0000
JC69IG	13	-1447.5058	2976.0335	0.0000	1.0000
SYM	16	-1439.4018	2978.5228	0.0000	1.0000
JC69	11	-1456.4085	2981.3738	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_17448.phylip = 1 - 509;
 Partition Dummy = 1:591-tomodel-phylip/chr3_17448.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_17448.phylip = 1 - 509;
 Partition Dummy = 1:591-tomodel-phylip/chr3_17448.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_17448.phylip = 1 - 509;
 Partition Dummy = 1:591-tomodel-phylip/chr3_17448.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

