
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:34 04/04/2011

Input data from file "591-tomodel-phylip/chr3_11796.phylip" (7 taxa, 1232 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-4113.1378	8266.2756	0.7121	0.7121
GTRIG	21	-4113.1534	8268.3069	0.2579	0.9700
GTRI	20	-4116.3050	8272.6099	0.0300	1.0000
HKYG	16	-4137.5779	8307.1558	0.0000	1.0000
HKYIG	17	-4137.5776	8309.1553	0.0000	1.0000
HKYI	16	-4140.6252	8313.2504	0.0000	1.0000
GTR	19	-4140.3830	8318.7660	0.0000	1.0000
HKY	15	-4164.7091	8359.4182	0.0000	1.0000
SYMG	17	-4201.7916	8437.5832	0.0000	1.0000
SYMIG	18	-4201.7914	8439.5829	0.0000	1.0000
SYMI	17	-4205.5323	8445.0646	0.0000	1.0000
K2PG	13	-4220.4935	8466.9870	0.0000	1.0000
K2PIG	14	-4220.4932	8468.9864	0.0000	1.0000
K2PI	13	-4223.8541	8473.7081	0.0000	1.0000
SYM	16	-4225.6065	8483.2131	0.0000	1.0000
F81G	15	-4229.5012	8489.0023	0.0000	1.0000
F81IG	16	-4229.5131	8491.0262	0.0000	1.0000
F81I	15	-4231.6250	8493.2500	0.0000	1.0000
K2P	12	-4244.5283	8513.0566	0.0000	1.0000
F81	14	-4250.8123	8529.6246	0.0000	1.0000
JC69G	12	-4295.9055	8615.8110	0.0000	1.0000
JC69IG	13	-4295.9055	8617.8109	0.0000	1.0000
JC69I	12	-4298.4278	8620.8556	0.0000	1.0000
JC69	11	-4317.2599	8656.5197	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-4113.1378	8368.6035	0.9344	0.9344
GTRI	20	-4116.3050	8374.9378	0.0394	0.9738
GTRIG	21	-4113.1534	8375.7511	0.0262	1.0000
HKYG	16	-4137.5779	8389.0181	0.0000	1.0000
HKYI	16	-4140.6252	8395.1127	0.0000	1.0000
HKYIG	17	-4137.5776	8396.1340	0.0000	1.0000
GTR	19	-4140.3830	8415.9775	0.0000	1.0000
HKY	15	-4164.7091	8436.1642	0.0000	1.0000
SYMG	17	-4201.7916	8524.5619	0.0000	1.0000
SYMIG	18	-4201.7914	8531.6780	0.0000	1.0000
SYMI	17	-4205.5323	8532.0433	0.0000	1.0000
K2PG	13	-4220.4935	8533.5001	0.0000	1.0000
K2PI	13	-4223.8541	8540.2212	0.0000	1.0000
K2PIG	14	-4220.4932	8540.6160	0.0000	1.0000
SYM	16	-4225.6065	8565.0754	0.0000	1.0000
F81G	15	-4229.5012	8565.7482	0.0000	1.0000
F81I	15	-4231.6250	8569.9959	0.0000	1.0000
F81IG	16	-4229.5131	8572.8885	0.0000	1.0000
K2P	12	-4244.5283	8574.4533	0.0000	1.0000
F81	14	-4250.8123	8601.2541	0.0000	1.0000
JC69G	12	-4295.9055	8677.2077	0.0000	1.0000
JC69I	12	-4298.4278	8682.2523	0.0000	1.0000
JC69IG	13	-4295.9055	8684.3241	0.0000	1.0000
JC69	11	-4317.2599	8712.8000	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_11796.phylip = 1 - 1232;
 Partition Dummy = 1:591-tomodel-phylip/chr3_11796.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_11796.phylip = 1 - 1232;
 Partition Dummy = 1:591-tomodel-phylip/chr3_11796.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr3_11796.phylip = 1 - 1232;
 Partition Dummy = 1:591-tomodel-phylip/chr3_11796.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

