
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:38 04/04/2011

Input data from file "591-tomodel-phylip/chr2_8655.phylip" (7 taxa, 463 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYI


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRI	20	-969.3879	1980.6762	0.6727	0.6727
GTRIG	21	-969.2475	1982.5903	0.2583	0.9310
HKYI	16	-976.7012	1986.6222	0.0344	0.9654
HKYIG	17	-975.7205	1986.8162	0.0312	0.9966
F81I	15	-980.7873	1992.6485	0.0017	0.9983
F81IG	16	-980.2139	1993.6476	0.0010	0.9993
GTRG	20	-976.5175	1994.9355	0.0005	0.9999
HKYG	16	-982.3370	1997.8936	0.0001	1.0000
F81G	15	-986.3352	2003.7442	0.0000	1.0000
SYMI	17	-985.9551	2007.2856	0.0000	1.0000
SYMIG	18	-985.9551	2009.4508	0.0000	1.0000
K2PI	13	-993.5756	2013.9619	0.0000	1.0000
K2PIG	14	-993.0418	2015.0211	0.0000	1.0000
JC69I	12	-997.3830	2019.4593	0.0000	1.0000
JC69IG	13	-997.0068	2020.8242	0.0000	1.0000
SYMG	17	-993.8797	2023.1348	0.0000	1.0000
K2PG	13	-999.7967	2026.4041	0.0000	1.0000
JC69G	12	-1003.3991	2031.4916	0.0000	1.0000
GTR	19	-1005.3897	2050.4951	0.0000	1.0000
HKY	15	-1010.1293	2051.3324	0.0000	1.0000
F81	14	-1013.9065	2056.7505	0.0000	1.0000
SYM	16	-1023.1687	2079.5571	0.0000	1.0000
K2P	12	-1027.9023	2080.4979	0.0000	1.0000
JC69	11	-1031.2836	2085.1525	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-969.3879	1978.7758	0.6671	0.6671
GTRIG	21	-969.2475	1980.4951	0.2824	0.9494
HKYI	16	-976.7012	1985.4025	0.0243	0.9737
HKYIG	17	-975.7205	1985.4410	0.0238	0.9975
F81I	15	-980.7873	1991.5747	0.0011	0.9986
F81IG	16	-980.2139	1992.4278	0.0007	0.9994
GTRG	20	-976.5175	1993.0351	0.0005	0.9999
HKYG	16	-982.3370	1996.6739	0.0001	1.0000
F81G	15	-986.3352	2002.6704	0.0000	1.0000
SYMI	17	-985.9551	2005.9103	0.0000	1.0000
SYMIG	18	-985.9551	2007.9103	0.0000	1.0000
K2PI	13	-993.5756	2013.1512	0.0000	1.0000
K2PIG	14	-993.0418	2014.0836	0.0000	1.0000
JC69I	12	-997.3830	2018.7659	0.0000	1.0000
JC69IG	13	-997.0068	2020.0135	0.0000	1.0000
SYMG	17	-993.8797	2021.7595	0.0000	1.0000
K2PG	13	-999.7967	2025.5934	0.0000	1.0000
JC69G	12	-1003.3991	2030.7982	0.0000	1.0000
GTR	19	-1005.3897	2048.7795	0.0000	1.0000
HKY	15	-1010.1293	2050.2586	0.0000	1.0000
F81	14	-1013.9065	2055.8130	0.0000	1.0000
SYM	16	-1023.1687	2078.3374	0.0000	1.0000
K2P	12	-1027.9023	2079.8046	0.0000	1.0000
JC69	11	-1031.2836	2084.5671	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-976.7012	2051.6061	0.6543	0.6543
F81I	15	-980.7873	2053.6406	0.2366	0.8908
HKYIG	17	-975.7205	2055.7823	0.0811	0.9719
F81IG	16	-980.2139	2058.6315	0.0195	0.9914
GTRI	20	-969.3879	2061.5303	0.0046	0.9960
HKYG	16	-982.3370	2062.8775	0.0023	0.9983
F81G	15	-986.3352	2064.7363	0.0009	0.9993
K2PI	13	-993.5756	2066.9417	0.0003	0.9996
GTRIG	21	-969.2475	2067.3873	0.0002	0.9998
JC69I	12	-997.3830	2068.4186	0.0001	1.0000
K2PIG	14	-993.0418	2072.0118	0.0000	1.0000
JC69IG	13	-997.0068	2073.8040	0.0000	1.0000
GTRG	20	-976.5175	2075.7896	0.0000	1.0000
SYMI	17	-985.9551	2076.2516	0.0000	1.0000
K2PG	13	-999.7967	2079.3839	0.0000	1.0000
JC69G	12	-1003.3991	2080.4510	0.0000	1.0000
SYMIG	18	-985.9551	2082.3894	0.0000	1.0000
SYMG	17	-993.8797	2092.1009	0.0000	1.0000
HKY	15	-1010.1293	2112.3245	0.0000	1.0000
F81	14	-1013.9065	2113.7412	0.0000	1.0000
GTR	19	-1005.3897	2127.3963	0.0000	1.0000
K2P	12	-1027.9023	2129.4573	0.0000	1.0000
JC69	11	-1031.2836	2130.0821	0.0000	1.0000
SYM	16	-1023.1687	2144.5410	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_8655.phylip = 1 - 463;
 Partition Dummy = 1:591-tomodel-phylip/chr2_8655.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_8655.phylip = 1 - 463;
 Partition Dummy = 1:591-tomodel-phylip/chr2_8655.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_8655.phylip = 1 - 463;
 Partition Dummy = 1:591-tomodel-phylip/chr2_8655.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

