
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:38 04/04/2011

Input data from file "591-tomodel-phylip/chr2_8600.phylip" (7 taxa, 630 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2154.0793	4349.5380	0.5064	0.5064
GTRIG	21	-2154.0846	4351.6889	0.1728	0.6792
GTRI	20	-2155.1593	4351.6979	0.1720	0.8511
HKYG	16	-2160.1340	4353.1554	0.0830	0.9341
HKYI	16	-2160.9389	4354.7653	0.0371	0.9712
HKYIG	17	-2160.1372	4355.2744	0.0288	1.0000
GTR	19	-2169.9339	4379.1136	0.0000	1.0000
HKY	15	-2175.8874	4382.5566	0.0000	1.0000
K2PG	13	-2195.7193	4418.0294	0.0000	1.0000
K2PI	13	-2196.6195	4419.8299	0.0000	1.0000
K2PIG	14	-2195.7277	4420.1383	0.0000	1.0000
SYMG	17	-2195.0243	4425.0485	0.0000	1.0000
SYMI	17	-2195.6553	4426.3106	0.0000	1.0000
SYMIG	18	-2195.0519	4427.2233	0.0000	1.0000
F81G	15	-2199.0550	4428.8917	0.0000	1.0000
F81I	15	-2200.0432	4430.8681	0.0000	1.0000
F81IG	16	-2199.0563	4431.0001	0.0000	1.0000
K2P	12	-2213.3984	4451.3024	0.0000	1.0000
SYM	16	-2212.1764	4457.2402	0.0000	1.0000
F81	14	-2215.6666	4460.0160	0.0000	1.0000
JC69G	12	-2228.6029	4481.7114	0.0000	1.0000
JC69IG	13	-2228.6029	4483.7966	0.0000	1.0000
JC69I	12	-2229.8553	4484.2162	0.0000	1.0000
JC69	11	-2246.4020	4515.2312	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2154.0793	4348.1587	0.5160	0.5160
GTRIG	21	-2154.0846	4350.1692	0.1888	0.7048
GTRI	20	-2155.1593	4350.3185	0.1752	0.8801
HKYG	16	-2160.1340	4352.2679	0.0661	0.9462
HKYI	16	-2160.9389	4353.8779	0.0296	0.9758
HKYIG	17	-2160.1372	4354.2744	0.0242	1.0000
GTR	19	-2169.9339	4377.8677	0.0000	1.0000
HKY	15	-2175.8874	4381.7748	0.0000	1.0000
K2PG	13	-2195.7193	4417.4385	0.0000	1.0000
K2PI	13	-2196.6195	4419.2390	0.0000	1.0000
K2PIG	14	-2195.7277	4419.4553	0.0000	1.0000
SYMG	17	-2195.0243	4424.0485	0.0000	1.0000
SYMI	17	-2195.6553	4425.3106	0.0000	1.0000
SYMIG	18	-2195.0519	4426.1039	0.0000	1.0000
F81G	15	-2199.0550	4428.1099	0.0000	1.0000
F81I	15	-2200.0432	4430.0863	0.0000	1.0000
F81IG	16	-2199.0563	4430.1127	0.0000	1.0000
K2P	12	-2213.3984	4450.7967	0.0000	1.0000
SYM	16	-2212.1764	4456.3527	0.0000	1.0000
F81	14	-2215.6666	4459.3331	0.0000	1.0000
JC69G	12	-2228.6029	4481.2057	0.0000	1.0000
JC69IG	13	-2228.6029	4483.2057	0.0000	1.0000
JC69I	12	-2229.8553	4483.7105	0.0000	1.0000
JC69	11	-2246.4020	4514.8040	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2160.1340	4423.3995	0.6719	0.6719
HKYI	16	-2160.9389	4425.0094	0.3004	0.9723
HKYIG	17	-2160.1372	4429.8516	0.0267	0.9990
GTRG	20	-2154.0793	4437.0731	0.0007	0.9997
GTRI	20	-2155.1593	4439.2329	0.0002	1.0000
GTRIG	21	-2154.0846	4443.5293	0.0000	1.0000
HKY	15	-2175.8874	4448.4606	0.0000	1.0000
GTR	19	-2169.9339	4462.3364	0.0000	1.0000
K2PG	13	-2195.7193	4475.2329	0.0000	1.0000
K2PI	13	-2196.6195	4477.0333	0.0000	1.0000
K2PIG	14	-2195.7277	4481.6954	0.0000	1.0000
F81G	15	-2199.0550	4494.7957	0.0000	1.0000
F81I	15	-2200.0432	4496.7721	0.0000	1.0000
SYMG	17	-2195.0243	4499.6258	0.0000	1.0000
SYMI	17	-2195.6553	4500.8879	0.0000	1.0000
F81IG	16	-2199.0563	4501.2442	0.0000	1.0000
K2P	12	-2213.3984	4504.1454	0.0000	1.0000
SYMIG	18	-2195.0519	4506.1268	0.0000	1.0000
F81	14	-2215.6666	4521.5732	0.0000	1.0000
SYM	16	-2212.1764	4527.4843	0.0000	1.0000
JC69G	12	-2228.6029	4534.5544	0.0000	1.0000
JC69I	12	-2229.8553	4537.0592	0.0000	1.0000
JC69IG	13	-2228.6029	4541.0001	0.0000	1.0000
JC69	11	-2246.4020	4563.7069	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_8600.phylip = 1 - 630;
 Partition Dummy = 1:591-tomodel-phylip/chr2_8600.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_8600.phylip = 1 - 630;
 Partition Dummy = 1:591-tomodel-phylip/chr2_8600.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_8600.phylip = 1 - 630;
 Partition Dummy = 1:591-tomodel-phylip/chr2_8600.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

