
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:37 04/04/2011

Input data from file "591-tomodel-phylip/chr2_8154.phylip" (7 taxa, 730 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1781.0817	3603.3481	0.3896	0.3896
GTRI	20	-1781.2692	3603.7231	0.3230	0.7125
GTRIG	21	-1781.0290	3605.3631	0.1422	0.8548
HKYG	16	-1787.0574	3606.8777	0.0667	0.9215
HKYI	16	-1787.3007	3607.3643	0.0523	0.9738
HKYIG	17	-1786.9430	3608.7456	0.0262	1.0000
GTR	19	-1796.0591	3631.1887	0.0000	1.0000
HKY	15	-1802.0153	3634.7028	0.0000	1.0000
K2PG	13	-1805.4964	3637.5012	0.0000	1.0000
K2PI	13	-1805.8591	3638.2266	0.0000	1.0000
K2PIG	14	-1805.3174	3639.2223	0.0000	1.0000
SYMG	17	-1802.7836	3640.4268	0.0000	1.0000
SYMI	17	-1803.1206	3641.1008	0.0000	1.0000
SYMIG	18	-1802.6341	3642.2302	0.0000	1.0000
F81G	15	-1812.9005	3656.4732	0.0000	1.0000
F81I	15	-1813.2130	3657.0982	0.0000	1.0000
F81IG	16	-1812.7578	3658.2786	0.0000	1.0000
K2P	12	-1820.7492	3665.9335	0.0000	1.0000
SYM	16	-1817.7718	3668.3066	0.0000	1.0000
JC69G	12	-1829.0673	3682.5697	0.0000	1.0000
F81	14	-1827.2459	3683.0791	0.0000	1.0000
JC69I	12	-1829.4362	3683.3075	0.0000	1.0000
JC69IG	13	-1828.8930	3684.2944	0.0000	1.0000
JC69	11	-1843.8546	3710.0768	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1781.0817	3602.1634	0.3966	0.3966
GTRI	20	-1781.2692	3602.5384	0.3288	0.7254
GTRIG	21	-1781.0290	3604.0580	0.1538	0.8792
HKYG	16	-1787.0574	3606.1148	0.0550	0.9342
HKYI	16	-1787.3007	3606.6013	0.0431	0.9773
HKYIG	17	-1786.9430	3607.8861	0.0227	1.0000
GTR	19	-1796.0591	3630.1183	0.0000	1.0000
HKY	15	-1802.0153	3634.0306	0.0000	1.0000
K2PG	13	-1805.4964	3636.9928	0.0000	1.0000
K2PI	13	-1805.8591	3637.7182	0.0000	1.0000
K2PIG	14	-1805.3174	3638.6349	0.0000	1.0000
SYMG	17	-1802.7836	3639.5673	0.0000	1.0000
SYMI	17	-1803.1206	3640.2412	0.0000	1.0000
SYMIG	18	-1802.6341	3641.2682	0.0000	1.0000
F81G	15	-1812.9005	3655.8010	0.0000	1.0000
F81I	15	-1813.2130	3656.4259	0.0000	1.0000
F81IG	16	-1812.7578	3657.5156	0.0000	1.0000
K2P	12	-1820.7492	3665.4984	0.0000	1.0000
SYM	16	-1817.7718	3667.5436	0.0000	1.0000
JC69G	12	-1829.0673	3682.1345	0.0000	1.0000
F81	14	-1827.2459	3682.4917	0.0000	1.0000
JC69I	12	-1829.4362	3682.8724	0.0000	1.0000
JC69IG	13	-1828.8930	3683.7860	0.0000	1.0000
JC69	11	-1843.8546	3709.7091	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1787.0574	3679.6035	0.5473	0.5473
HKYI	16	-1787.3007	3680.0901	0.4291	0.9763
HKYIG	17	-1786.9430	3685.9678	0.0227	0.9991
GTRG	20	-1781.0817	3694.0243	0.0004	0.9995
GTRI	20	-1781.2692	3694.3993	0.0003	0.9998
K2PG	13	-1805.4964	3696.7024	0.0001	0.9999
K2PI	13	-1805.8591	3697.4278	0.0001	1.0000
GTRIG	21	-1781.0290	3700.5120	0.0000	1.0000
HKY	15	-1802.0153	3702.9262	0.0000	1.0000
K2PIG	14	-1805.3174	3702.9375	0.0000	1.0000
GTR	19	-1796.0591	3717.3861	0.0000	1.0000
SYMG	17	-1802.7836	3717.6490	0.0000	1.0000
SYMI	17	-1803.1206	3718.3230	0.0000	1.0000
K2P	12	-1820.7492	3720.6149	0.0000	1.0000
SYMIG	18	-1802.6341	3723.9430	0.0000	1.0000
F81G	15	-1812.9005	3724.6966	0.0000	1.0000
F81I	15	-1813.2130	3725.3216	0.0000	1.0000
F81IG	16	-1812.7578	3731.0044	0.0000	1.0000
JC69G	12	-1829.0673	3737.2511	0.0000	1.0000
JC69I	12	-1829.4362	3737.9889	0.0000	1.0000
SYM	16	-1817.7718	3741.0323	0.0000	1.0000
JC69IG	13	-1828.8930	3743.4956	0.0000	1.0000
F81	14	-1827.2459	3746.7943	0.0000	1.0000
JC69	11	-1843.8546	3760.2326	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_8154.phylip = 1 - 730;
 Partition Dummy = 1:591-tomodel-phylip/chr2_8154.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_8154.phylip = 1 - 730;
 Partition Dummy = 1:591-tomodel-phylip/chr2_8154.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_8154.phylip = 1 - 730;
 Partition Dummy = 1:591-tomodel-phylip/chr2_8154.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

