
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:36 04/04/2011

Input data from file "591-tomodel-phylip/chr2_8051.phylip" (7 taxa, 799 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2714.6278	5470.3352	0.5930	0.5930
GTRIG	21	-2714.6390	5472.4673	0.2042	0.7972
HKYG	16	-2720.7359	5474.1674	0.0873	0.8845
GTRI	20	-2716.8389	5474.7574	0.0650	0.9495
HKYIG	17	-2720.7470	5476.2776	0.0304	0.9798
HKYI	16	-2722.8633	5478.4222	0.0104	0.9902
SYMG	17	-2722.7996	5480.3828	0.0039	0.9941
K2PG	13	-2727.3265	5481.1167	0.0027	0.9968
SYMIG	18	-2722.7997	5482.4763	0.0014	0.9982
K2PIG	14	-2727.3318	5483.1992	0.0010	0.9992
SYMI	17	-2724.8774	5484.5384	0.0005	0.9997
K2PI	13	-2729.3996	5485.2629	0.0003	1.0000
GTR	19	-2734.7593	5508.4942	0.0000	1.0000
HKY	15	-2741.6506	5513.9142	0.0000	1.0000
SYM	16	-2743.4131	5519.5219	0.0000	1.0000
K2P	12	-2748.5849	5521.5666	0.0000	1.0000
F81G	15	-2747.7982	5526.2095	0.0000	1.0000
F81IG	16	-2747.8032	5528.3022	0.0000	1.0000
F81I	15	-2749.4296	5529.4722	0.0000	1.0000
JC69G	12	-2753.6272	5531.6513	0.0000	1.0000
JC69IG	13	-2753.6295	5533.7226	0.0000	1.0000
JC69I	12	-2755.2568	5534.9105	0.0000	1.0000
F81	14	-2766.4712	5561.4781	0.0000	1.0000
JC69	11	-2772.5941	5567.5236	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2714.6278	5469.2555	0.5999	0.5999
GTRIG	21	-2714.6390	5471.2781	0.2182	0.8181
HKYG	16	-2720.7359	5473.4717	0.0729	0.8910
GTRI	20	-2716.8389	5473.6777	0.0657	0.9567
HKYIG	17	-2720.7470	5475.4939	0.0265	0.9832
HKYI	16	-2722.8633	5477.7266	0.0087	0.9919
SYMG	17	-2722.7996	5479.5992	0.0034	0.9953
K2PG	13	-2727.3265	5480.6530	0.0020	0.9973
SYMIG	18	-2722.7997	5481.5993	0.0013	0.9986
K2PIG	14	-2727.3318	5482.6635	0.0007	0.9993
SYMI	17	-2724.8774	5483.7548	0.0004	0.9997
K2PI	13	-2729.3996	5484.7992	0.0003	1.0000
GTR	19	-2734.7593	5507.5186	0.0000	1.0000
HKY	15	-2741.6506	5513.3012	0.0000	1.0000
SYM	16	-2743.4131	5518.8263	0.0000	1.0000
K2P	12	-2748.5849	5521.1697	0.0000	1.0000
F81G	15	-2747.7982	5525.5965	0.0000	1.0000
F81IG	16	-2747.8032	5527.6065	0.0000	1.0000
F81I	15	-2749.4296	5528.8592	0.0000	1.0000
JC69G	12	-2753.6272	5531.2543	0.0000	1.0000
JC69IG	13	-2753.6295	5533.2589	0.0000	1.0000
JC69I	12	-2755.2568	5534.5135	0.0000	1.0000
F81	14	-2766.4712	5560.9424	0.0000	1.0000
JC69	11	-2772.5941	5567.1881	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-2727.3265	5541.5367	0.8345	0.8345
K2PI	13	-2729.3996	5545.6829	0.1050	0.9394
K2PIG	14	-2727.3318	5548.2306	0.0294	0.9688
HKYG	16	-2720.7359	5548.4055	0.0269	0.9957
HKYI	16	-2722.8633	5552.6603	0.0032	0.9989
HKYIG	17	-2720.7470	5555.1111	0.0009	0.9998
SYMG	17	-2722.7996	5559.2163	0.0001	1.0000
GTRG	20	-2714.6278	5562.9228	0.0000	1.0000
SYMI	17	-2724.8774	5563.3719	0.0000	1.0000
SYMIG	18	-2722.7997	5565.8998	0.0000	1.0000
GTRI	20	-2716.8389	5567.3449	0.0000	1.0000
GTRIG	21	-2714.6390	5569.6287	0.0000	1.0000
K2P	12	-2748.5849	5577.3700	0.0000	1.0000
HKY	15	-2741.6506	5583.5516	0.0000	1.0000
JC69G	12	-2753.6272	5587.4547	0.0000	1.0000
JC69I	12	-2755.2568	5590.7139	0.0000	1.0000
SYM	16	-2743.4131	5593.7600	0.0000	1.0000
JC69IG	13	-2753.6295	5594.1426	0.0000	1.0000
F81G	15	-2747.7982	5595.8469	0.0000	1.0000
GTR	19	-2734.7593	5596.5024	0.0000	1.0000
F81I	15	-2749.4296	5599.1096	0.0000	1.0000
F81IG	16	-2747.8032	5602.5403	0.0000	1.0000
JC69	11	-2772.5941	5618.7051	0.0000	1.0000
F81	14	-2766.4712	5626.5094	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_8051.phylip = 1 - 799;
 Partition Dummy = 1:591-tomodel-phylip/chr2_8051.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_8051.phylip = 1 - 799;
 Partition Dummy = 1:591-tomodel-phylip/chr2_8051.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_8051.phylip = 1 - 799;
 Partition Dummy = 1:591-tomodel-phylip/chr2_8051.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

