
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:34 04/04/2011

Input data from file "591-tomodel-phylip/chr2_7954.phylip" (7 taxa, 514 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1512.4637	3066.6312	0.5778	0.5778
GTRIG	21	-1511.8152	3067.5085	0.3726	0.9504
GTRI	20	-1515.0424	3071.7887	0.0438	0.9942
HKYG	16	-1522.0115	3077.1175	0.0031	0.9973
HKYIG	17	-1521.2027	3077.6394	0.0024	0.9996
HKYI	16	-1524.1503	3081.3953	0.0004	1.0000
SYMG	17	-1529.6623	3094.5585	0.0000	1.0000
SYMIG	18	-1529.0999	3095.5816	0.0000	1.0000
K2PG	13	-1534.4848	3095.6975	0.0000	1.0000
K2PIG	14	-1533.7442	3096.3302	0.0000	1.0000
SYMI	17	-1531.6231	3098.4802	0.0000	1.0000
K2PI	13	-1536.4659	3099.6597	0.0000	1.0000
GTR	19	-1542.9132	3125.3649	0.0000	1.0000
F81G	15	-1552.3155	3135.5948	0.0000	1.0000
F81IG	16	-1551.9831	3137.0607	0.0000	1.0000
HKY	15	-1553.5705	3138.1048	0.0000	1.0000
F81I	15	-1553.7510	3138.4658	0.0000	1.0000
JC69G	12	-1561.8521	3148.3270	0.0000	1.0000
SYM	16	-1558.3109	3149.7163	0.0000	1.0000
JC69IG	13	-1561.4986	3149.7251	0.0000	1.0000
JC69I	12	-1563.2807	3151.1841	0.0000	1.0000
K2P	12	-1565.4164	3155.4556	0.0000	1.0000
F81	14	-1579.4439	3187.7295	0.0000	1.0000
JC69	11	-1589.1218	3200.7694	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1512.4637	3064.9273	0.5596	0.5596
GTRIG	21	-1511.8152	3065.6304	0.3937	0.9533
GTRI	20	-1515.0424	3070.0848	0.0425	0.9958
HKYG	16	-1522.0115	3076.0229	0.0022	0.9979
HKYIG	17	-1521.2027	3076.4055	0.0018	0.9997
HKYI	16	-1524.1503	3080.3007	0.0003	1.0000
SYMG	17	-1529.6623	3093.3247	0.0000	1.0000
SYMIG	18	-1529.0999	3094.1997	0.0000	1.0000
K2PG	13	-1534.4848	3094.9695	0.0000	1.0000
K2PIG	14	-1533.7442	3095.4885	0.0000	1.0000
SYMI	17	-1531.6231	3097.2463	0.0000	1.0000
K2PI	13	-1536.4659	3098.9317	0.0000	1.0000
GTR	19	-1542.9132	3123.8265	0.0000	1.0000
F81G	15	-1552.3155	3134.6310	0.0000	1.0000
F81IG	16	-1551.9831	3135.9661	0.0000	1.0000
HKY	15	-1553.5705	3137.1410	0.0000	1.0000
F81I	15	-1553.7510	3137.5020	0.0000	1.0000
JC69G	12	-1561.8521	3147.7042	0.0000	1.0000
SYM	16	-1558.3109	3148.6217	0.0000	1.0000
JC69IG	13	-1561.4986	3148.9971	0.0000	1.0000
JC69I	12	-1563.2807	3150.5614	0.0000	1.0000
K2P	12	-1565.4164	3154.8328	0.0000	1.0000
F81	14	-1579.4439	3186.8878	0.0000	1.0000
JC69	11	-1589.1218	3200.2435	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1522.0115	3143.8985	0.7500	0.7500
HKYI	16	-1524.1503	3148.1763	0.0883	0.8384
HKYIG	17	-1521.2027	3148.5233	0.0743	0.9127
GTRG	20	-1512.4637	3149.7718	0.0398	0.9524
K2PG	13	-1534.4848	3150.1184	0.0335	0.9859
K2PI	13	-1536.4659	3154.0806	0.0046	0.9905
GTRIG	21	-1511.8152	3154.7171	0.0034	0.9939
K2PIG	14	-1533.7442	3154.8796	0.0031	0.9970
GTRI	20	-1515.0424	3154.9293	0.0030	1.0000
SYMG	17	-1529.6623	3165.4425	0.0000	1.0000
SYMI	17	-1531.6231	3169.3641	0.0000	1.0000
SYMIG	18	-1529.0999	3170.5598	0.0000	1.0000
F81G	15	-1552.3155	3198.2643	0.0000	1.0000
JC69G	12	-1561.8521	3198.6109	0.0000	1.0000
HKY	15	-1553.5705	3200.7743	0.0000	1.0000
F81I	15	-1553.7510	3201.1353	0.0000	1.0000
JC69I	12	-1563.2807	3201.4681	0.0000	1.0000
F81IG	16	-1551.9831	3203.8417	0.0000	1.0000
JC69IG	13	-1561.4986	3204.1460	0.0000	1.0000
GTR	19	-1542.9132	3204.4287	0.0000	1.0000
K2P	12	-1565.4164	3205.7395	0.0000	1.0000
SYM	16	-1558.3109	3216.4973	0.0000	1.0000
F81	14	-1579.4439	3246.2789	0.0000	1.0000
JC69	11	-1589.1218	3246.9080	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_7954.phylip = 1 - 514;
 Partition Dummy = 1:591-tomodel-phylip/chr2_7954.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_7954.phylip = 1 - 514;
 Partition Dummy = 1:591-tomodel-phylip/chr2_7954.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_7954.phylip = 1 - 514;
 Partition Dummy = 1:591-tomodel-phylip/chr2_7954.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

