
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:34 04/04/2011

Input data from file "591-tomodel-phylip/chr2_7927.phylip" (7 taxa, 1206 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3679.9726	7399.9451	0.6290	0.6290
GTRIG	21	-3679.6824	7401.3647	0.3093	0.9384
GTRI	20	-3682.2983	7404.5965	0.0615	0.9998
HKYG	16	-3692.7643	7417.5285	0.0001	0.9999
HKYIG	17	-3692.5308	7419.0616	0.0000	1.0000
HKYI	16	-3694.5813	7421.1626	0.0000	1.0000
SYMG	17	-3695.6228	7425.2456	0.0000	1.0000
SYMIG	18	-3695.3956	7426.7913	0.0000	1.0000
SYMI	17	-3697.6939	7429.3878	0.0000	1.0000
K2PG	13	-3705.0705	7436.1409	0.0000	1.0000
K2PIG	14	-3704.8776	7437.7552	0.0000	1.0000
K2PI	13	-3706.7703	7439.5407	0.0000	1.0000
GTR	19	-3742.9441	7523.8881	0.0000	1.0000
F81G	15	-3754.6985	7539.3971	0.0000	1.0000
F81IG	16	-3754.4889	7540.9778	0.0000	1.0000
F81I	15	-3756.4896	7542.9793	0.0000	1.0000
HKY	15	-3757.1862	7544.3723	0.0000	1.0000
SYM	16	-3757.2303	7546.4606	0.0000	1.0000
JC69G	12	-3763.5921	7551.1841	0.0000	1.0000
JC69IG	13	-3763.4000	7552.8001	0.0000	1.0000
JC69I	12	-3765.3197	7554.6394	0.0000	1.0000
K2P	12	-3768.9957	7561.9915	0.0000	1.0000
F81	14	-3811.8354	7651.6709	0.0000	1.0000
JC69	11	-3821.2485	7664.4971	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3692.7643	7499.0495	0.5841	0.5841
GTRG	20	-3679.9726	7501.8464	0.1443	0.7283
K2PG	13	-3705.0705	7502.3768	0.1107	0.8390
HKYI	16	-3694.5813	7502.6836	0.0949	0.9339
HKYIG	17	-3692.5308	7505.6777	0.0212	0.9551
K2PI	13	-3706.7703	7505.7765	0.0202	0.9754
GTRI	20	-3682.2983	7506.4978	0.0141	0.9895
GTRIG	21	-3679.6824	7508.3611	0.0056	0.9950
K2PIG	14	-3704.8776	7509.0861	0.0039	0.9989
SYMG	17	-3695.6228	7511.8617	0.0010	0.9998
SYMI	17	-3697.6939	7516.0039	0.0001	1.0000
SYMIG	18	-3695.3956	7518.5025	0.0000	1.0000
JC69G	12	-3763.5921	7612.3249	0.0000	1.0000
JC69I	12	-3765.3197	7615.7802	0.0000	1.0000
F81G	15	-3754.6985	7615.8230	0.0000	1.0000
JC69IG	13	-3763.4000	7619.0359	0.0000	1.0000
F81I	15	-3756.4896	7619.4052	0.0000	1.0000
GTR	19	-3742.9441	7620.6943	0.0000	1.0000
HKY	15	-3757.1862	7620.7983	0.0000	1.0000
F81IG	16	-3754.4889	7622.4989	0.0000	1.0000
K2P	12	-3768.9957	7623.1322	0.0000	1.0000
SYM	16	-3757.2303	7627.9816	0.0000	1.0000
JC69	11	-3821.2485	7720.5428	0.0000	1.0000
F81	14	-3811.8354	7723.0018	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_7927.phylip = 1 - 1206;
 Partition Dummy = 1:591-tomodel-phylip/chr2_7927.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_7927.phylip = 1 - 1206;
 Partition Dummy = 1:591-tomodel-phylip/chr2_7927.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_7927.phylip = 1 - 1206;
 Partition Dummy = 1:591-tomodel-phylip/chr2_7927.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

