
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:39 04/04/2011

Input data from file "591-tomodel-phylip/chr2_6737.phylip" (7 taxa, 365 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-948.5871	1939.6161	0.3276	0.3276
HKYG	16	-953.4786	1940.5203	0.2084	0.5360
GTRIG	21	-948.2077	1941.1093	0.1552	0.6912
GTRI	20	-949.6162	1941.6742	0.1170	0.8083
HKYI	16	-954.2467	1942.0566	0.0967	0.9049
HKYIG	17	-953.1684	1942.1005	0.0946	0.9995
F81G	15	-961.4366	1954.2485	0.0002	0.9997
F81I	15	-961.9676	1955.3106	0.0001	0.9999
F81IG	16	-961.3074	1956.1780	0.0001	1.0000
HKY	15	-963.5292	1958.4337	0.0000	1.0000
GTR	19	-959.4376	1959.0780	0.0000	1.0000
K2PG	13	-970.1980	1967.4331	0.0000	1.0000
K2PI	13	-970.8115	1968.6601	0.0000	1.0000
F81	14	-969.7324	1968.6649	0.0000	1.0000
K2PIG	14	-969.9454	1969.0908	0.0000	1.0000
SYMG	17	-968.6005	1972.9647	0.0000	1.0000
SYMI	17	-969.3297	1974.4230	0.0000	1.0000
SYMIG	18	-968.3297	1974.6363	0.0000	1.0000
JC69G	12	-976.2670	1977.4203	0.0000	1.0000
JC69I	12	-976.7250	1978.3363	0.0000	1.0000
JC69IG	13	-976.1520	1979.3411	0.0000	1.0000
K2P	12	-979.7084	1984.3032	0.0000	1.0000
SYM	16	-978.0525	1989.6683	0.0000	1.0000
JC69	11	-984.4895	1991.7269	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-948.5871	1937.1742	0.3701	0.3701
GTRIG	21	-948.2077	1938.4155	0.1990	0.5691
HKYG	16	-953.4786	1938.9571	0.1518	0.7209
GTRI	20	-949.6162	1939.2323	0.1323	0.8531
HKYIG	17	-953.1684	1940.3368	0.0761	0.9293
HKYI	16	-954.2467	1940.4934	0.0704	0.9997
F81G	15	-961.4366	1952.8732	0.0001	0.9998
F81I	15	-961.9676	1953.9353	0.0001	0.9999
F81IG	16	-961.3074	1954.6148	0.0001	1.0000
GTR	19	-959.4376	1956.8751	0.0000	1.0000
HKY	15	-963.5292	1957.0584	0.0000	1.0000
K2PG	13	-970.1980	1966.3960	0.0000	1.0000
F81	14	-969.7324	1967.4649	0.0000	1.0000
K2PI	13	-970.8115	1967.6230	0.0000	1.0000
K2PIG	14	-969.9454	1967.8908	0.0000	1.0000
SYMG	17	-968.6005	1971.2011	0.0000	1.0000
SYMI	17	-969.3297	1972.6593	0.0000	1.0000
SYMIG	18	-968.3297	1972.6594	0.0000	1.0000
JC69G	12	-976.2670	1976.5339	0.0000	1.0000
JC69I	12	-976.7250	1977.4500	0.0000	1.0000
JC69IG	13	-976.1520	1978.3040	0.0000	1.0000
K2P	12	-979.7084	1983.4168	0.0000	1.0000
SYM	16	-978.0525	1988.1051	0.0000	1.0000
JC69	11	-984.4895	1990.9790	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-953.4786	2001.3555	0.6455	0.6455
HKYI	16	-954.2467	2002.8918	0.2994	0.9449
HKYIG	17	-953.1684	2006.6351	0.0461	0.9910
F81G	15	-961.4366	2011.3716	0.0043	0.9953
F81I	15	-961.9676	2012.4337	0.0025	0.9978
GTRG	20	-948.5871	2015.1721	0.0006	0.9985
HKY	15	-963.5292	2015.5568	0.0005	0.9990
F81IG	16	-961.3074	2017.0131	0.0003	0.9993
K2PG	13	-970.1980	2017.0947	0.0002	0.9995
GTRI	20	-949.6162	2017.2303	0.0002	0.9998
K2PI	13	-970.8115	2018.3217	0.0001	0.9999
GTRIG	21	-948.2077	2020.3133	0.0000	0.9999
F81	14	-969.7324	2022.0634	0.0000	1.0000
K2PIG	14	-969.9454	2022.4894	0.0000	1.0000
JC69G	12	-976.2670	2023.3327	0.0000	1.0000
JC69I	12	-976.7250	2024.2487	0.0000	1.0000
JC69IG	13	-976.1520	2029.0027	0.0000	1.0000
K2P	12	-979.7084	2030.2156	0.0000	1.0000
GTR	19	-959.4376	2030.9732	0.0000	1.0000
JC69	11	-984.4895	2033.8779	0.0000	1.0000
SYMG	17	-968.6005	2037.4993	0.0000	1.0000
SYMI	17	-969.3297	2038.9576	0.0000	1.0000
SYMIG	18	-968.3297	2042.8575	0.0000	1.0000
SYM	16	-978.0525	2050.5035	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_6737.phylip = 1 - 365;
 Partition Dummy = 1:591-tomodel-phylip/chr2_6737.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_6737.phylip = 1 - 365;
 Partition Dummy = 1:591-tomodel-phylip/chr2_6737.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_6737.phylip = 1 - 365;
 Partition Dummy = 1:591-tomodel-phylip/chr2_6737.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

