
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:38 04/04/2011

Input data from file "591-tomodel-phylip/chr2_5499.phylip" (7 taxa, 861 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2661.8354	5363.6709	0.5790	0.5790
GTRIG	21	-2661.7718	5365.5436	0.2270	0.8061
GTRI	20	-2663.0331	5366.0662	0.1748	0.9809
HKYG	16	-2670.3262	5372.6524	0.0065	0.9874
SYMG	17	-2669.7984	5373.5968	0.0040	0.9914
HKYIG	17	-2670.2266	5374.4532	0.0026	0.9940
SYMI	17	-2670.5474	5375.0948	0.0019	0.9960
HKYI	16	-2671.5528	5375.1055	0.0019	0.9979
SYMIG	18	-2669.7567	5375.5134	0.0016	0.9994
K2PG	13	-2676.3212	5378.6424	0.0003	0.9997
K2PIG	14	-2676.2321	5380.4642	0.0001	0.9999
K2PI	13	-2677.2701	5380.5402	0.0001	1.0000
GTR	19	-2694.9794	5427.9587	0.0000	1.0000
HKY	15	-2702.4583	5434.9165	0.0000	1.0000
SYM	16	-2701.7487	5435.4974	0.0000	1.0000
K2P	12	-2708.0450	5440.0900	0.0000	1.0000
F81G	15	-2713.3155	5456.6310	0.0000	1.0000
F81I	15	-2714.0613	5458.1227	0.0000	1.0000
F81IG	16	-2713.2663	5458.5327	0.0000	1.0000
JC69G	12	-2718.1112	5460.2224	0.0000	1.0000
JC69I	12	-2718.7441	5461.4882	0.0000	1.0000
JC69IG	13	-2718.0717	5462.1434	0.0000	1.0000
F81	14	-2742.5090	5513.0180	0.0000	1.0000
JC69	11	-2747.0922	5516.1843	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-2676.3212	5440.4976	0.6910	0.6910
K2PI	13	-2677.2701	5442.3954	0.2676	0.9586
K2PIG	14	-2676.2321	5447.0775	0.0257	0.9843
HKYG	16	-2670.3262	5448.7819	0.0110	0.9953
HKYI	16	-2671.5528	5451.2351	0.0032	0.9985
SYMG	17	-2669.7984	5454.4844	0.0006	0.9992
HKYIG	17	-2670.2266	5455.3408	0.0004	0.9996
SYMI	17	-2670.5474	5455.9824	0.0003	0.9999
GTRG	20	-2661.8354	5458.8328	0.0001	1.0000
SYMIG	18	-2669.7567	5461.1591	0.0000	1.0000
GTRI	20	-2663.0331	5461.2281	0.0000	1.0000
GTRIG	21	-2661.7718	5465.4636	0.0000	1.0000
K2P	12	-2708.0450	5497.1871	0.0000	1.0000
HKY	15	-2702.4583	5506.2879	0.0000	1.0000
SYM	16	-2701.7487	5511.6270	0.0000	1.0000
JC69G	12	-2718.1112	5517.3195	0.0000	1.0000
GTR	19	-2694.9794	5518.3625	0.0000	1.0000
JC69I	12	-2718.7441	5518.5853	0.0000	1.0000
JC69IG	13	-2718.0717	5523.9986	0.0000	1.0000
F81G	15	-2713.3155	5528.0025	0.0000	1.0000
F81I	15	-2714.0613	5529.4941	0.0000	1.0000
F81IG	16	-2713.2663	5534.6622	0.0000	1.0000
JC69	11	-2747.0922	5568.5234	0.0000	1.0000
F81	14	-2742.5090	5579.6313	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_5499.phylip = 1 - 861;
 Partition Dummy = 1:591-tomodel-phylip/chr2_5499.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_5499.phylip = 1 - 861;
 Partition Dummy = 1:591-tomodel-phylip/chr2_5499.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_5499.phylip = 1 - 861;
 Partition Dummy = 1:591-tomodel-phylip/chr2_5499.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

