
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:37 04/04/2011

Input data from file "591-tomodel-phylip/chr2_27317.phylip" (7 taxa, 798 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2153.1251	4347.3313	0.6241	0.6241
GTRIG	21	-2153.1111	4349.4129	0.2204	0.8445
GTRI	20	-2154.6248	4350.3307	0.1393	0.9838
HKYG	16	-2161.5089	4355.7143	0.0094	0.9932
HKYI	16	-2162.5221	4357.7407	0.0034	0.9967
HKYIG	17	-2161.5064	4357.7974	0.0033	1.0000
GTR	19	-2166.5908	4372.1585	0.0000	1.0000
HKY	15	-2174.8951	4380.4041	0.0000	1.0000
K2PG	13	-2200.4926	4427.4495	0.0000	1.0000
SYMG	17	-2196.6653	4428.1152	0.0000	1.0000
K2PI	13	-2201.2465	4428.9572	0.0000	1.0000
K2PIG	14	-2200.4961	4429.5286	0.0000	1.0000
SYMI	17	-2197.6660	4430.1166	0.0000	1.0000
SYMIG	18	-2196.6606	4430.1992	0.0000	1.0000
F81G	15	-2201.9811	4434.5759	0.0000	1.0000
F81I	15	-2202.7775	4436.1689	0.0000	1.0000
F81IG	16	-2201.9778	4436.6521	0.0000	1.0000
K2P	12	-2214.5147	4453.4269	0.0000	1.0000
SYM	16	-2210.8595	4454.4155	0.0000	1.0000
F81	14	-2213.7928	4456.1220	0.0000	1.0000
JC69G	12	-2236.2132	4496.8238	0.0000	1.0000
JC69I	12	-2236.9030	4498.2036	0.0000	1.0000
JC69IG	13	-2236.2125	4498.8892	0.0000	1.0000
JC69	11	-2248.4900	4519.3159	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2153.1251	4346.2502	0.6181	0.6181
GTRIG	21	-2153.1111	4348.2222	0.2306	0.8487
GTRI	20	-2154.6248	4349.2496	0.1380	0.9866
HKYG	16	-2161.5089	4355.0178	0.0077	0.9944
HKYIG	17	-2161.5064	4357.0128	0.0028	0.9972
HKYI	16	-2162.5221	4357.0441	0.0028	1.0000
GTR	19	-2166.5908	4371.1816	0.0000	1.0000
HKY	15	-2174.8951	4379.7903	0.0000	1.0000
K2PG	13	-2200.4926	4426.9852	0.0000	1.0000
SYMG	17	-2196.6653	4427.3306	0.0000	1.0000
K2PI	13	-2201.2465	4428.4929	0.0000	1.0000
K2PIG	14	-2200.4961	4428.9922	0.0000	1.0000
SYMIG	18	-2196.6606	4429.3211	0.0000	1.0000
SYMI	17	-2197.6660	4429.3320	0.0000	1.0000
F81G	15	-2201.9811	4433.9621	0.0000	1.0000
F81I	15	-2202.7775	4435.5551	0.0000	1.0000
F81IG	16	-2201.9778	4435.9556	0.0000	1.0000
K2P	12	-2214.5147	4453.0295	0.0000	1.0000
SYM	16	-2210.8595	4453.7189	0.0000	1.0000
F81	14	-2213.7928	4455.5856	0.0000	1.0000
JC69G	12	-2236.2132	4496.4264	0.0000	1.0000
JC69I	12	-2236.9030	4497.8061	0.0000	1.0000
JC69IG	13	-2236.2125	4498.4250	0.0000	1.0000
JC69	11	-2248.4900	4518.9800	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2161.5089	4429.9315	0.7106	0.7106
HKYI	16	-2162.5221	4431.9579	0.2580	0.9686
HKYIG	17	-2161.5064	4436.6086	0.0252	0.9938
GTRG	20	-2153.1251	4439.8924	0.0049	0.9987
GTRI	20	-2154.6248	4442.8918	0.0011	0.9998
GTRIG	21	-2153.1111	4446.5465	0.0002	1.0000
HKY	15	-2174.8951	4450.0219	0.0000	1.0000
GTR	19	-2166.5908	4460.1417	0.0000	1.0000
K2PG	13	-2200.4926	4487.8527	0.0000	1.0000
K2PI	13	-2201.2465	4489.3603	0.0000	1.0000
K2PIG	14	-2200.4961	4494.5418	0.0000	1.0000
F81G	15	-2201.9811	4504.1937	0.0000	1.0000
F81I	15	-2202.7775	4505.7867	0.0000	1.0000
SYMG	17	-2196.6653	4506.9264	0.0000	1.0000
SYMI	17	-2197.6660	4508.9278	0.0000	1.0000
K2P	12	-2214.5147	4509.2148	0.0000	1.0000
F81IG	16	-2201.9778	4510.8693	0.0000	1.0000
SYMIG	18	-2196.6606	4513.5991	0.0000	1.0000
F81	14	-2213.7928	4521.1351	0.0000	1.0000
SYM	16	-2210.8595	4528.6327	0.0000	1.0000
JC69G	12	-2236.2132	4552.6117	0.0000	1.0000
JC69I	12	-2236.9030	4553.9914	0.0000	1.0000
JC69IG	13	-2236.2125	4559.2924	0.0000	1.0000
JC69	11	-2248.4900	4570.4832	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_27317.phylip = 1 - 798;
 Partition Dummy = 1:591-tomodel-phylip/chr2_27317.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_27317.phylip = 1 - 798;
 Partition Dummy = 1:591-tomodel-phylip/chr2_27317.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_27317.phylip = 1 - 798;
 Partition Dummy = 1:591-tomodel-phylip/chr2_27317.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

