
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:36 04/04/2011

Input data from file "591-tomodel-phylip/chr2_26677.phylip" (7 taxa, 1155 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2933.1313	5906.2626	0.5417	0.5417
GTRI	20	-2933.9250	5907.8501	0.2449	0.7866
GTRIG	21	-2933.0653	5908.1305	0.2129	0.9995
HKYG	16	-2944.7558	5921.5117	0.0003	0.9998
HKYI	16	-2945.3963	5922.7925	0.0001	0.9999
HKYIG	17	-2944.6987	5923.3973	0.0001	1.0000
GTR	19	-2950.2293	5938.4585	0.0000	1.0000
HKY	15	-2962.0434	5954.0868	0.0000	1.0000
SYMG	17	-3004.8212	6043.6424	0.0000	1.0000
SYMI	17	-3005.3097	6044.6195	0.0000	1.0000
K2PG	13	-3009.4296	6044.8593	0.0000	1.0000
SYMIG	18	-3004.7806	6045.5611	0.0000	1.0000
K2PI	13	-3009.9418	6045.8835	0.0000	1.0000
K2PIG	14	-3009.3813	6046.7626	0.0000	1.0000
F81G	15	-3009.3325	6048.6650	0.0000	1.0000
F81I	15	-3009.9559	6049.9117	0.0000	1.0000
F81IG	16	-3009.2831	6050.5662	0.0000	1.0000
SYM	16	-3022.7615	6077.5230	0.0000	1.0000
F81	14	-3025.3719	6078.7438	0.0000	1.0000
K2P	12	-3028.2689	6080.5378	0.0000	1.0000
JC69G	12	-3065.9601	6155.9201	0.0000	1.0000
JC69I	12	-3066.5134	6157.0269	0.0000	1.0000
JC69IG	13	-3065.9139	6157.8278	0.0000	1.0000
JC69	11	-3082.6102	6187.2204	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2944.7558	6002.3414	0.5943	0.5943
HKYI	16	-2945.3963	6003.6222	0.3133	0.9076
GTRG	20	-2933.1313	6007.2997	0.0498	0.9574
GTRI	20	-2933.9250	6008.8872	0.0225	0.9799
HKYIG	17	-2944.6987	6009.2789	0.0185	0.9984
GTRIG	21	-2933.0653	6014.2195	0.0016	1.0000
HKY	15	-2962.0434	6029.8647	0.0000	1.0000
GTR	19	-2950.2293	6034.4438	0.0000	1.0000
K2PG	13	-3009.4296	6110.5334	0.0000	1.0000
K2PI	13	-3009.9418	6111.5577	0.0000	1.0000
K2PIG	14	-3009.3813	6117.4885	0.0000	1.0000
F81G	15	-3009.3325	6124.4429	0.0000	1.0000
F81I	15	-3009.9559	6125.6896	0.0000	1.0000
SYMG	17	-3004.8212	6129.5239	0.0000	1.0000
SYMI	17	-3005.3097	6130.5010	0.0000	1.0000
F81IG	16	-3009.2831	6131.3959	0.0000	1.0000
SYMIG	18	-3004.7806	6136.4945	0.0000	1.0000
K2P	12	-3028.2689	6141.1601	0.0000	1.0000
F81	14	-3025.3719	6149.4697	0.0000	1.0000
SYM	16	-3022.7615	6158.3527	0.0000	1.0000
JC69G	12	-3065.9601	6216.5424	0.0000	1.0000
JC69I	12	-3066.5134	6217.6491	0.0000	1.0000
JC69IG	13	-3065.9139	6223.5019	0.0000	1.0000
JC69	11	-3082.6102	6242.7908	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_26677.phylip = 1 - 1155;
 Partition Dummy = 1:591-tomodel-phylip/chr2_26677.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_26677.phylip = 1 - 1155;
 Partition Dummy = 1:591-tomodel-phylip/chr2_26677.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_26677.phylip = 1 - 1155;
 Partition Dummy = 1:591-tomodel-phylip/chr2_26677.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

