
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:34 04/04/2011

Input data from file "591-tomodel-phylip/chr2_25984.phylip" (7 taxa, 552 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1738.3524	3518.2866	0.6200	0.6200
GTRIG	21	-1738.2065	3520.1564	0.2434	0.8635
GTRI	20	-1739.8655	3521.3130	0.1365	1.0000
HKYG	16	-1757.6844	3548.3855	0.0000	1.0000
HKYIG	17	-1757.5151	3550.1763	0.0000	1.0000
HKYI	16	-1759.2483	3551.5133	0.0000	1.0000
GTR	19	-1764.6082	3568.6450	0.0000	1.0000
SYMG	17	-1767.8544	3570.8548	0.0000	1.0000
SYMIG	18	-1767.7161	3572.7155	0.0000	1.0000
SYMI	17	-1769.5471	3574.2403	0.0000	1.0000
K2PG	13	-1783.6981	3594.0728	0.0000	1.0000
K2PIG	14	-1783.5222	3595.8266	0.0000	1.0000
HKY	15	-1782.5155	3595.9266	0.0000	1.0000
K2PI	13	-1785.3699	3597.4165	0.0000	1.0000
F81G	15	-1787.0563	3605.0082	0.0000	1.0000
F81IG	16	-1786.8977	3606.8121	0.0000	1.0000
F81I	15	-1788.7601	3608.4156	0.0000	1.0000
SYM	16	-1793.7982	3620.6131	0.0000	1.0000
K2P	12	-1808.3027	3641.1843	0.0000	1.0000
JC69G	12	-1811.9942	3648.5673	0.0000	1.0000
JC69IG	13	-1811.8643	3650.4051	0.0000	1.0000
F81	14	-1811.2413	3651.2648	0.0000	1.0000
JC69I	12	-1813.5212	3651.6211	0.0000	1.0000
JC69	11	-1835.8381	3694.1652	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1738.3524	3516.7047	0.6076	0.6076
GTRIG	21	-1738.2065	3518.4130	0.2586	0.8662
GTRI	20	-1739.8655	3519.7311	0.1338	1.0000
HKYG	16	-1757.6844	3547.3687	0.0000	1.0000
HKYIG	17	-1757.5151	3549.0303	0.0000	1.0000
HKYI	16	-1759.2483	3550.4965	0.0000	1.0000
GTR	19	-1764.6082	3567.2164	0.0000	1.0000
SYMG	17	-1767.8544	3569.7087	0.0000	1.0000
SYMIG	18	-1767.7161	3571.4322	0.0000	1.0000
SYMI	17	-1769.5471	3573.0943	0.0000	1.0000
K2PG	13	-1783.6981	3593.3963	0.0000	1.0000
HKY	15	-1782.5155	3595.0311	0.0000	1.0000
K2PIG	14	-1783.5222	3595.0445	0.0000	1.0000
K2PI	13	-1785.3699	3596.7399	0.0000	1.0000
F81G	15	-1787.0563	3604.1126	0.0000	1.0000
F81IG	16	-1786.8977	3605.7953	0.0000	1.0000
F81I	15	-1788.7601	3607.5201	0.0000	1.0000
SYM	16	-1793.7982	3619.5963	0.0000	1.0000
K2P	12	-1808.3027	3640.6054	0.0000	1.0000
JC69G	12	-1811.9942	3647.9885	0.0000	1.0000
JC69IG	13	-1811.8643	3649.7285	0.0000	1.0000
F81	14	-1811.2413	3650.4827	0.0000	1.0000
JC69I	12	-1813.5212	3651.0423	0.0000	1.0000
JC69	11	-1835.8381	3693.6763	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-1738.3524	3602.9757	0.7868	0.7868
GTRI	20	-1739.8655	3606.0020	0.1733	0.9600
GTRIG	21	-1738.2065	3608.9975	0.0387	0.9988
HKYG	16	-1757.6844	3616.3855	0.0010	0.9997
HKYI	16	-1759.2483	3619.5133	0.0002	1.0000
HKYIG	17	-1757.5151	3622.3606	0.0000	1.0000
SYMG	17	-1767.8544	3643.0390	0.0000	1.0000
SYMI	17	-1769.5471	3646.4246	0.0000	1.0000
SYMIG	18	-1767.7161	3649.0760	0.0000	1.0000
GTR	19	-1764.6082	3649.1738	0.0000	1.0000
K2PG	13	-1783.6981	3649.4724	0.0000	1.0000
K2PI	13	-1785.3699	3652.8160	0.0000	1.0000
K2PIG	14	-1783.5222	3655.4341	0.0000	1.0000
HKY	15	-1782.5155	3659.7343	0.0000	1.0000
F81G	15	-1787.0563	3668.8159	0.0000	1.0000
F81I	15	-1788.7601	3672.2233	0.0000	1.0000
F81IG	16	-1786.8977	3674.8121	0.0000	1.0000
SYM	16	-1793.7982	3688.6131	0.0000	1.0000
K2P	12	-1808.3027	3692.3680	0.0000	1.0000
JC69G	12	-1811.9942	3699.7511	0.0000	1.0000
JC69I	12	-1813.5212	3702.8049	0.0000	1.0000
JC69IG	13	-1811.8643	3705.8046	0.0000	1.0000
F81	14	-1811.2413	3710.8723	0.0000	1.0000
JC69	11	-1835.8381	3741.1253	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_25984.phylip = 1 - 552;
 Partition Dummy = 1:591-tomodel-phylip/chr2_25984.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_25984.phylip = 1 - 552;
 Partition Dummy = 1:591-tomodel-phylip/chr2_25984.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_25984.phylip = 1 - 552;
 Partition Dummy = 1:591-tomodel-phylip/chr2_25984.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

