
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:34 04/04/2011

Input data from file "591-tomodel-phylip/chr2_25833.phylip" (7 taxa, 1067 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3515.1370	7070.2739	0.6369	0.6369
GTRIG	21	-3515.0322	7072.0643	0.2602	0.8971
GTRI	20	-3517.6266	7075.2531	0.0528	0.9499
HKYG	16	-3522.0699	7076.1398	0.0339	0.9839
HKYIG	17	-3521.9760	7077.9521	0.0137	0.9976
HKYI	16	-3524.6991	7081.3982	0.0024	1.0000
SYMG	17	-3551.4960	7136.9921	0.0000	1.0000
SYMIG	18	-3551.4823	7138.9645	0.0000	1.0000
SYMI	17	-3553.3867	7140.7735	0.0000	1.0000
K2PG	13	-3558.1470	7142.2940	0.0000	1.0000
K2PIG	14	-3558.1319	7144.2639	0.0000	1.0000
K2PI	13	-3560.4238	7146.8476	0.0000	1.0000
GTR	19	-3559.8529	7157.7058	0.0000	1.0000
HKY	15	-3567.9193	7165.8386	0.0000	1.0000
SYM	16	-3593.1817	7218.3633	0.0000	1.0000
K2P	12	-3601.0231	7226.0462	0.0000	1.0000
F81G	15	-3616.8284	7263.6567	0.0000	1.0000
F81IG	16	-3616.8457	7265.6915	0.0000	1.0000
F81I	15	-3617.9635	7265.9270	0.0000	1.0000
JC69G	12	-3643.8108	7311.6217	0.0000	1.0000
JC69IG	13	-3643.8488	7313.6977	0.0000	1.0000
JC69I	12	-3644.9041	7313.8082	0.0000	1.0000
F81	14	-3656.0892	7340.1784	0.0000	1.0000
JC69	11	-3682.3241	7386.6483	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3522.0699	7155.7015	0.9035	0.9035
HKYI	16	-3524.6991	7160.9599	0.0652	0.9687
HKYIG	17	-3521.9760	7162.4864	0.0304	0.9991
GTRG	20	-3515.1370	7169.7261	0.0008	0.9999
GTRI	20	-3517.6266	7174.7053	0.0001	1.0000
GTRIG	21	-3515.0322	7176.4891	0.0000	1.0000
K2PG	13	-3558.1470	7206.9379	0.0000	1.0000
K2PI	13	-3560.4238	7211.4914	0.0000	1.0000
K2PIG	14	-3558.1319	7213.8804	0.0000	1.0000
SYMG	17	-3551.4960	7221.5264	0.0000	1.0000
SYMI	17	-3553.3867	7225.3078	0.0000	1.0000
SYMIG	18	-3551.4823	7228.4714	0.0000	1.0000
HKY	15	-3567.9193	7240.4277	0.0000	1.0000
GTR	19	-3559.8529	7252.1853	0.0000	1.0000
K2P	12	-3601.0231	7285.7174	0.0000	1.0000
SYM	16	-3593.1817	7297.9250	0.0000	1.0000
F81G	15	-3616.8284	7338.2458	0.0000	1.0000
F81I	15	-3617.9635	7340.5161	0.0000	1.0000
F81IG	16	-3616.8457	7345.2532	0.0000	1.0000
JC69G	12	-3643.8108	7371.2930	0.0000	1.0000
JC69I	12	-3644.9041	7373.4794	0.0000	1.0000
JC69IG	13	-3643.8488	7378.3416	0.0000	1.0000
F81	14	-3656.0892	7409.7949	0.0000	1.0000
JC69	11	-3682.3241	7441.3469	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_25833.phylip = 1 - 1067;
 Partition Dummy = 1:591-tomodel-phylip/chr2_25833.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_25833.phylip = 1 - 1067;
 Partition Dummy = 1:591-tomodel-phylip/chr2_25833.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_25833.phylip = 1 - 1067;
 Partition Dummy = 1:591-tomodel-phylip/chr2_25833.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

