
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:33 04/04/2011

Input data from file "591-tomodel-phylip/chr2_24941.phylip" (7 taxa, 945 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3475.5530	6991.1061	0.3436	0.3436
HKYG	16	-3479.7255	6991.4510	0.2891	0.6327
GTRIG	21	-3475.5531	6993.1062	0.1264	0.7591
HKYIG	17	-3479.7256	6993.4511	0.1064	0.8655
HKYI	16	-3481.1186	6994.2373	0.0718	0.9373
GTRI	20	-3477.2535	6994.5070	0.0627	1.0000
K2PG	13	-3510.3841	7046.7681	0.0000	1.0000
K2PI	13	-3511.3168	7048.6335	0.0000	1.0000
K2PIG	14	-3510.4273	7048.8547	0.0000	1.0000
SYMG	17	-3508.7892	7051.5785	0.0000	1.0000
HKY	15	-3511.5077	7053.0153	0.0000	1.0000
GTR	19	-3507.7028	7053.4056	0.0000	1.0000
SYMI	17	-3509.7901	7053.5803	0.0000	1.0000
SYMIG	18	-3508.8358	7053.6716	0.0000	1.0000
K2P	12	-3543.2598	7110.5197	0.0000	1.0000
SYM	16	-3542.3398	7116.6796	0.0000	1.0000
F81G	15	-3566.1721	7162.3442	0.0000	1.0000
F81I	15	-3566.1978	7162.3956	0.0000	1.0000
F81IG	16	-3565.9730	7163.9459	0.0000	1.0000
JC69I	12	-3590.4276	7204.8553	0.0000	1.0000
JC69G	12	-3590.4613	7204.9227	0.0000	1.0000
JC69IG	13	-3590.2243	7206.4486	0.0000	1.0000
F81	14	-3593.4251	7214.8503	0.0000	1.0000
JC69	11	-3618.7462	7259.4924	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3479.7255	7069.0700	0.7807	0.7807
HKYI	16	-3481.1186	7071.8563	0.1938	0.9745
HKYIG	17	-3479.7256	7075.9213	0.0254	0.9999
GTRG	20	-3475.5530	7088.1298	0.0001	1.0000
GTRI	20	-3477.2535	7091.5307	0.0000	1.0000
GTRIG	21	-3475.5531	7094.9810	0.0000	1.0000
K2PG	13	-3510.3841	7109.8335	0.0000	1.0000
K2PI	13	-3511.3168	7111.6989	0.0000	1.0000
K2PIG	14	-3510.4273	7116.7713	0.0000	1.0000
HKY	15	-3511.5077	7125.7831	0.0000	1.0000
SYMG	17	-3508.7892	7134.0486	0.0000	1.0000
SYMI	17	-3509.7901	7136.0504	0.0000	1.0000
SYMIG	18	-3508.8358	7140.9929	0.0000	1.0000
GTR	19	-3507.7028	7145.5781	0.0000	1.0000
K2P	12	-3543.2598	7168.7339	0.0000	1.0000
SYM	16	-3542.3398	7194.2985	0.0000	1.0000
F81G	15	-3566.1721	7235.1120	0.0000	1.0000
F81I	15	-3566.1978	7235.1633	0.0000	1.0000
F81IG	16	-3565.9730	7241.5649	0.0000	1.0000
JC69I	12	-3590.4276	7263.0695	0.0000	1.0000
JC69G	12	-3590.4613	7263.1369	0.0000	1.0000
JC69IG	13	-3590.2243	7269.5140	0.0000	1.0000
F81	14	-3593.4251	7282.7669	0.0000	1.0000
JC69	11	-3618.7462	7312.8555	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_24941.phylip = 1 - 945;
 Partition Dummy = 1:591-tomodel-phylip/chr2_24941.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_24941.phylip = 1 - 945;
 Partition Dummy = 1:591-tomodel-phylip/chr2_24941.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_24941.phylip = 1 - 945;
 Partition Dummy = 1:591-tomodel-phylip/chr2_24941.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

