
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:38 04/04/2011

Input data from file "591-tomodel-phylip/chr2_24763.phylip" (7 taxa, 930 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2936.3125	5912.6249	0.5636	0.5636
GTRI	20	-2937.2718	5914.5437	0.2159	0.7795
GTRIG	21	-2936.3959	5914.7917	0.1907	0.9703
HKYG	16	-2943.9996	5919.9993	0.0141	0.9844
HKYI	16	-2944.2947	5920.5895	0.0105	0.9949
HKYIG	17	-2944.0125	5922.0250	0.0051	1.0000
K2PG	13	-2964.9019	5955.8037	0.0000	1.0000
K2PI	13	-2964.9348	5955.8696	0.0000	1.0000
K2PIG	14	-2964.9757	5957.9513	0.0000	1.0000
SYMG	17	-2962.4808	5958.9616	0.0000	1.0000
SYMI	17	-2962.6563	5959.3125	0.0000	1.0000
SYMIG	18	-2962.5249	5961.0498	0.0000	1.0000
GTR	19	-2963.3559	5964.7117	0.0000	1.0000
HKY	15	-2969.9331	5969.8661	0.0000	1.0000
F81I	15	-2977.8569	5985.7139	0.0000	1.0000
F81G	15	-2978.7524	5987.5048	0.0000	1.0000
F81IG	16	-2977.8778	5987.7557	0.0000	1.0000
K2P	12	-2991.0805	6006.1610	0.0000	1.0000
SYM	16	-2988.4996	6008.9992	0.0000	1.0000
JC69I	12	-2995.7987	6015.5974	0.0000	1.0000
JC69G	12	-2996.7255	6017.4510	0.0000	1.0000
JC69IG	13	-2995.8168	6017.6335	0.0000	1.0000
F81	14	-3001.6821	6031.3642	0.0000	1.0000
JC69	11	-3019.9243	6061.8485	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2943.9996	5997.3622	0.5617	0.5617
HKYI	16	-2944.2947	5997.9524	0.4181	0.9798
HKYIG	17	-2944.0125	6004.2232	0.0182	0.9980
GTRG	20	-2936.3125	6009.3286	0.0014	0.9994
GTRI	20	-2937.2718	6011.2474	0.0005	0.9999
GTRIG	21	-2936.3959	6016.3306	0.0000	1.0000
K2PG	13	-2964.9019	6018.6611	0.0000	1.0000
K2PI	13	-2964.9348	6018.7270	0.0000	1.0000
K2PIG	14	-2964.9757	6025.6439	0.0000	1.0000
SYMG	17	-2962.4808	6041.1597	0.0000	1.0000
SYMI	17	-2962.6563	6041.5107	0.0000	1.0000
HKY	15	-2969.9331	6042.3939	0.0000	1.0000
SYMIG	18	-2962.5249	6048.0831	0.0000	1.0000
GTR	19	-2963.3559	6056.5802	0.0000	1.0000
F81I	15	-2977.8569	6058.2416	0.0000	1.0000
F81G	15	-2978.7524	6060.0326	0.0000	1.0000
K2P	12	-2991.0805	6064.1832	0.0000	1.0000
F81IG	16	-2977.8778	6065.1187	0.0000	1.0000
JC69I	12	-2995.7987	6073.6196	0.0000	1.0000
JC69G	12	-2996.7255	6075.4732	0.0000	1.0000
JC69IG	13	-2995.8168	6080.4909	0.0000	1.0000
SYM	16	-2988.4996	6086.3621	0.0000	1.0000
F81	14	-3001.6821	6099.0567	0.0000	1.0000
JC69	11	-3019.9243	6115.0356	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_24763.phylip = 1 - 930;
 Partition Dummy = 1:591-tomodel-phylip/chr2_24763.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_24763.phylip = 1 - 930;
 Partition Dummy = 1:591-tomodel-phylip/chr2_24763.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_24763.phylip = 1 - 930;
 Partition Dummy = 1:591-tomodel-phylip/chr2_24763.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

