
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:36 04/04/2011

Input data from file "591-tomodel-phylip/chr2_24251.phylip" (7 taxa, 1046 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-3617.3122	7266.6244	0.5832	0.5832
HKYIG	17	-3617.3130	7268.6261	0.2144	0.7976
GTRG	20	-3614.7358	7269.4716	0.1405	0.9380
GTRIG	21	-3614.7403	7271.4805	0.0514	0.9895
HKYI	16	-3621.5085	7275.0171	0.0088	0.9983
GTRI	20	-3619.1217	7278.2435	0.0017	1.0000
K2PG	13	-3646.0961	7318.1922	0.0000	1.0000
K2PIG	14	-3646.1019	7320.2037	0.0000	1.0000
K2PI	13	-3649.3117	7324.6233	0.0000	1.0000
SYMG	17	-3645.8375	7325.6750	0.0000	1.0000
SYMIG	18	-3645.8383	7327.6765	0.0000	1.0000
HKY	15	-3649.6101	7329.2203	0.0000	1.0000
SYMI	17	-3648.8697	7331.7394	0.0000	1.0000
GTR	19	-3646.9870	7331.9740	0.0000	1.0000
K2P	12	-3679.1016	7382.2032	0.0000	1.0000
SYM	16	-3678.7587	7389.5173	0.0000	1.0000
F81G	15	-3736.8679	7503.7358	0.0000	1.0000
F81IG	16	-3736.8679	7505.7358	0.0000	1.0000
F81I	15	-3739.3745	7508.7489	0.0000	1.0000
JC69G	12	-3759.1738	7542.3477	0.0000	1.0000
JC69IG	13	-3759.1738	7544.3477	0.0000	1.0000
JC69I	12	-3761.3460	7546.6921	0.0000	1.0000
F81	14	-3763.5016	7555.0032	0.0000	1.0000
JC69	11	-3786.5494	7595.0988	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3617.3122	7345.8681	0.9561	0.9561
HKYIG	17	-3617.3130	7352.8225	0.0295	0.9856
HKYI	16	-3621.5085	7354.2607	0.0144	1.0000
GTRG	20	-3614.7358	7368.5262	0.0000	1.0000
GTRIG	21	-3614.7403	7375.4878	0.0000	1.0000
GTRI	20	-3619.1217	7377.2980	0.0000	1.0000
K2PG	13	-3646.0961	7382.5776	0.0000	1.0000
K2PI	13	-3649.3117	7389.0088	0.0000	1.0000
K2PIG	14	-3646.1019	7389.5419	0.0000	1.0000
HKY	15	-3649.6101	7403.5112	0.0000	1.0000
SYMG	17	-3645.8375	7409.8714	0.0000	1.0000
SYMI	17	-3648.8697	7415.9358	0.0000	1.0000
SYMIG	18	-3645.8383	7416.8256	0.0000	1.0000
GTR	19	-3646.9870	7426.0758	0.0000	1.0000
K2P	12	-3679.1016	7441.6359	0.0000	1.0000
SYM	16	-3678.7587	7468.7610	0.0000	1.0000
F81G	15	-3736.8679	7578.0267	0.0000	1.0000
F81I	15	-3739.3745	7583.0399	0.0000	1.0000
F81IG	16	-3736.8679	7584.9794	0.0000	1.0000
JC69G	12	-3759.1738	7601.7804	0.0000	1.0000
JC69I	12	-3761.3460	7606.1248	0.0000	1.0000
JC69IG	13	-3759.1738	7608.7332	0.0000	1.0000
F81	14	-3763.5016	7624.3414	0.0000	1.0000
JC69	11	-3786.5494	7649.5789	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_24251.phylip = 1 - 1046;
 Partition Dummy = 1:591-tomodel-phylip/chr2_24251.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_24251.phylip = 1 - 1046;
 Partition Dummy = 1:591-tomodel-phylip/chr2_24251.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_24251.phylip = 1 - 1046;
 Partition Dummy = 1:591-tomodel-phylip/chr2_24251.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

