
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:36 04/04/2011

Input data from file "591-tomodel-phylip/chr2_23690.phylip" (7 taxa, 903 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: SYMG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2933.7925	5907.5850	0.5532	0.5532
GTRI	20	-2934.7241	5909.4481	0.2179	0.7711
GTRIG	21	-2933.8075	5909.6150	0.2005	0.9715
SYMG	17	-2940.4224	5914.8448	0.0147	0.9862
SYMI	17	-2940.9766	5915.9532	0.0084	0.9946
SYMIG	18	-2940.4278	5916.8556	0.0054	1.0000
HKYG	16	-2952.5675	5937.1350	0.0000	1.0000
HKYI	16	-2953.0191	5938.0382	0.0000	1.0000
HKYIG	17	-2952.5717	5939.1434	0.0000	1.0000
K2PG	13	-2958.7815	5943.5630	0.0000	1.0000
GTR	19	-2952.9950	5943.9899	0.0000	1.0000
K2PI	13	-2959.1167	5944.2334	0.0000	1.0000
K2PIG	14	-2958.8139	5945.6279	0.0000	1.0000
SYM	16	-2958.5934	5949.1869	0.0000	1.0000
HKY	15	-2971.5571	5973.1141	0.0000	1.0000
K2P	12	-2977.9548	5979.9095	0.0000	1.0000
F81G	15	-3012.7565	6055.5131	0.0000	1.0000
F81I	15	-3013.2121	6056.4241	0.0000	1.0000
F81IG	16	-3012.7742	6057.5485	0.0000	1.0000
JC69G	12	-3020.4501	6064.9001	0.0000	1.0000
JC69I	12	-3020.7350	6065.4699	0.0000	1.0000
JC69IG	13	-3020.4775	6066.9550	0.0000	1.0000
F81	14	-3031.0194	6090.0387	0.0000	1.0000
JC69	11	-3037.8859	6097.7718	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
SYMG	17	-2940.4224	5996.5421	0.6014	0.6014
SYMI	17	-2940.9766	5997.6505	0.3455	0.9469
SYMIG	18	-2940.4278	6003.3586	0.0199	0.9668
GTRG	20	-2933.7925	6003.6995	0.0168	0.9836
GTRI	20	-2934.7241	6005.5626	0.0066	0.9902
K2PG	13	-2958.7815	6006.0374	0.0052	0.9954
K2PI	13	-2959.1167	6006.7078	0.0037	0.9991
GTRIG	21	-2933.8075	6010.5352	0.0006	0.9997
K2PIG	14	-2958.8139	6012.9080	0.0002	0.9998
HKYG	16	-2952.5675	6014.0266	0.0001	0.9999
HKYI	16	-2953.0191	6014.9297	0.0001	1.0000
HKYIG	17	-2952.5717	6020.8407	0.0000	1.0000
SYM	16	-2958.5934	6026.0784	0.0000	1.0000
GTR	19	-2952.9950	6035.2987	0.0000	1.0000
K2P	12	-2977.9548	6037.5782	0.0000	1.0000
HKY	15	-2971.5571	6045.2000	0.0000	1.0000
JC69G	12	-3020.4501	6122.5688	0.0000	1.0000
JC69I	12	-3020.7350	6123.1386	0.0000	1.0000
F81G	15	-3012.7565	6127.5989	0.0000	1.0000
F81I	15	-3013.2121	6128.5099	0.0000	1.0000
JC69IG	13	-3020.4775	6129.4294	0.0000	1.0000
F81IG	16	-3012.7742	6134.4400	0.0000	1.0000
JC69	11	-3037.8859	6150.6347	0.0000	1.0000
F81	14	-3031.0194	6157.3188	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_23690.phylip = 1 - 903;
 Partition Dummy = 1:591-tomodel-phylip/chr2_23690.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_23690.phylip = 1 - 903;
 Partition Dummy = 1:591-tomodel-phylip/chr2_23690.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (SYMG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_23690.phylip = 1 - 903;
 Partition Dummy = 1:591-tomodel-phylip/chr2_23690.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Fixed(Equal);
END;


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End of Output

