
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:34 04/04/2011

Input data from file "591-tomodel-phylip/chr2_23293.phylip" (7 taxa, 1096 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYI


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-4479.2766	8998.5533	0.4740	0.4740
GTRIG	21	-4478.6161	8999.2322	0.3376	0.8116
GTRG	20	-4480.2087	9000.4174	0.1866	0.9982
HKYI	16	-4489.5174	9011.0349	0.0009	0.9991
HKYIG	17	-4489.0427	9012.0855	0.0005	0.9997
HKYG	16	-4490.6164	9013.2328	0.0003	1.0000
SYMI	17	-4515.7015	9065.4030	0.0000	1.0000
SYMIG	18	-4515.4883	9066.9765	0.0000	1.0000
SYMG	17	-4517.4127	9068.8253	0.0000	1.0000
K2PI	13	-4522.1610	9070.3220	0.0000	1.0000
K2PIG	14	-4521.9343	9071.8686	0.0000	1.0000
K2PG	13	-4523.8110	9073.6220	0.0000	1.0000
GTR	19	-4543.3941	9124.7882	0.0000	1.0000
HKY	15	-4551.6012	9133.2023	0.0000	1.0000
SYM	16	-4573.0822	9178.1644	0.0000	1.0000
K2P	12	-4580.0029	9184.0058	0.0000	1.0000
F81I	15	-4594.2816	9218.5632	0.0000	1.0000
F81IG	16	-4594.2846	9220.5693	0.0000	1.0000
F81G	15	-4597.4704	9224.9409	0.0000	1.0000
JC69I	12	-4616.6354	9257.2708	0.0000	1.0000
JC69IG	13	-4616.6442	9259.2883	0.0000	1.0000
JC69G	12	-4620.0484	9264.0968	0.0000	1.0000
F81	14	-4648.6060	9325.2120	0.0000	1.0000
JC69	11	-4669.8009	9361.6019	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-4489.5174	9091.0256	0.7064	0.7064
HKYG	16	-4490.6164	9093.2235	0.2354	0.9418
HKYIG	17	-4489.0427	9097.0756	0.0343	0.9761
GTRI	20	-4479.2766	9098.5417	0.0165	0.9925
GTRG	20	-4480.2087	9100.4058	0.0065	0.9990
GTRIG	21	-4478.6161	9104.2200	0.0010	1.0000
K2PI	13	-4522.1610	9135.3145	0.0000	1.0000
K2PG	13	-4523.8110	9138.6145	0.0000	1.0000
K2PIG	14	-4521.9343	9141.8605	0.0000	1.0000
SYMI	17	-4515.7015	9150.3932	0.0000	1.0000
SYMG	17	-4517.4127	9153.8155	0.0000	1.0000
SYMIG	18	-4515.4883	9156.9661	0.0000	1.0000
HKY	15	-4551.6012	9208.1936	0.0000	1.0000
GTR	19	-4543.3941	9219.7773	0.0000	1.0000
K2P	12	-4580.0029	9243.9988	0.0000	1.0000
SYM	16	-4573.0822	9258.1551	0.0000	1.0000
F81I	15	-4594.2816	9293.5546	0.0000	1.0000
F81G	15	-4597.4704	9299.9322	0.0000	1.0000
F81IG	16	-4594.2846	9300.5600	0.0000	1.0000
JC69I	12	-4616.6354	9317.2639	0.0000	1.0000
JC69G	12	-4620.0484	9324.0899	0.0000	1.0000
JC69IG	13	-4616.6442	9324.2808	0.0000	1.0000
F81	14	-4648.6060	9395.2040	0.0000	1.0000
JC69	11	-4669.8009	9416.5955	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_23293.phylip = 1 - 1096;
 Partition Dummy = 1:591-tomodel-phylip/chr2_23293.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_23293.phylip = 1 - 1096;
 Partition Dummy = 1:591-tomodel-phylip/chr2_23293.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_23293.phylip = 1 - 1096;
 Partition Dummy = 1:591-tomodel-phylip/chr2_23293.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

