
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:33 04/04/2011

Input data from file "591-tomodel-phylip/chr2_23124.phylip" (7 taxa, 964 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2906.8358	5853.6716	0.6932	0.6932
GTRIG	21	-2906.7563	5855.5125	0.2761	0.9693
GTRI	20	-2909.9543	5859.9086	0.0307	1.0000
HKYG	16	-2926.0315	5884.0629	0.0000	1.0000
HKYIG	17	-2925.8825	5885.7650	0.0000	1.0000
HKYI	16	-2928.9383	5889.8765	0.0000	1.0000
GTR	19	-2940.0118	5918.0236	0.0000	1.0000
SYMG	17	-2945.3971	5924.7941	0.0000	1.0000
SYMIG	18	-2945.3222	5926.6445	0.0000	1.0000
SYMI	17	-2947.4578	5928.9155	0.0000	1.0000
K2PG	13	-2957.4023	5940.8045	0.0000	1.0000
K2PIG	14	-2957.2724	5942.5447	0.0000	1.0000
K2PI	13	-2959.6407	5945.2814	0.0000	1.0000
HKY	15	-2959.8156	5949.6313	0.0000	1.0000
F81G	15	-2974.9850	5979.9700	0.0000	1.0000
F81IG	16	-2974.9010	5981.8021	0.0000	1.0000
F81I	15	-2977.2436	5984.4872	0.0000	1.0000
SYM	16	-2978.4484	5988.8968	0.0000	1.0000
K2P	12	-2991.7232	6007.4464	0.0000	1.0000
JC69G	12	-3001.0247	6026.0495	0.0000	1.0000
JC69IG	13	-3000.9928	6027.9855	0.0000	1.0000
JC69I	12	-3002.3048	6028.6095	0.0000	1.0000
F81	14	-3006.8458	6041.6916	0.0000	1.0000
JC69	11	-3033.9161	6089.8323	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-2906.8358	5951.0934	0.9227	0.9227
GTRI	20	-2909.9543	5957.3304	0.0408	0.9635
GTRIG	21	-2906.7563	5957.8054	0.0322	0.9957
HKYG	16	-2926.0315	5962.0004	0.0040	0.9996
HKYI	16	-2928.9383	5967.8140	0.0002	0.9999
HKYIG	17	-2925.8825	5968.5736	0.0001	1.0000
K2PG	13	-2957.4023	6004.1287	0.0000	1.0000
SYMG	17	-2945.3971	6007.6027	0.0000	1.0000
K2PI	13	-2959.6407	6008.6056	0.0000	1.0000
GTR	19	-2940.0118	6010.5743	0.0000	1.0000
K2PIG	14	-2957.2724	6010.7400	0.0000	1.0000
SYMI	17	-2947.4578	6011.7241	0.0000	1.0000
SYMIG	18	-2945.3222	6014.3241	0.0000	1.0000
HKY	15	-2959.8156	6022.6976	0.0000	1.0000
F81G	15	-2974.9850	6053.0363	0.0000	1.0000
F81I	15	-2977.2436	6057.5535	0.0000	1.0000
F81IG	16	-2974.9010	6059.7396	0.0000	1.0000
K2P	12	-2991.7232	6065.8995	0.0000	1.0000
SYM	16	-2978.4484	6066.8343	0.0000	1.0000
JC69G	12	-3001.0247	6084.5026	0.0000	1.0000
JC69I	12	-3002.3048	6087.0626	0.0000	1.0000
JC69IG	13	-3000.9928	6091.3097	0.0000	1.0000
F81	14	-3006.8458	6109.8869	0.0000	1.0000
JC69	11	-3033.9161	6143.4143	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_23124.phylip = 1 - 964;
 Partition Dummy = 1:591-tomodel-phylip/chr2_23124.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_23124.phylip = 1 - 964;
 Partition Dummy = 1:591-tomodel-phylip/chr2_23124.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_23124.phylip = 1 - 964;
 Partition Dummy = 1:591-tomodel-phylip/chr2_23124.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

