
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:38 04/04/2011

Input data from file "591-tomodel-phylip/chr2_21445.phylip" (7 taxa, 745 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2565.7472	5172.6546	0.5641	0.5641
GTRIG	21	-2565.6828	5174.6435	0.2087	0.7728
GTRI	20	-2567.3008	5175.7619	0.1193	0.8921
HKYG	16	-2572.0620	5176.8713	0.0685	0.9606
HKYIG	17	-2572.0357	5178.9133	0.0247	0.9853
HKYI	16	-2573.5977	5179.9427	0.0147	1.0000
GTR	19	-2587.7846	5214.6176	0.0000	1.0000
HKY	15	-2592.8312	5216.3208	0.0000	1.0000
SYMG	17	-2613.6627	5262.1673	0.0000	1.0000
K2PG	13	-2618.6985	5263.8949	0.0000	1.0000
SYMIG	18	-2613.6620	5264.2661	0.0000	1.0000
K2PIG	14	-2618.7038	5265.9829	0.0000	1.0000
SYMI	17	-2616.2519	5267.3457	0.0000	1.0000
K2PI	13	-2620.8232	5268.1443	0.0000	1.0000
SYM	16	-2637.2065	5307.1602	0.0000	1.0000
K2P	12	-2641.3808	5307.1879	0.0000	1.0000
F81G	15	-2639.5965	5309.8514	0.0000	1.0000
F81IG	16	-2639.6093	5311.9659	0.0000	1.0000
F81I	15	-2641.2512	5313.1608	0.0000	1.0000
F81	14	-2659.4054	5347.3861	0.0000	1.0000
JC69G	12	-2677.8410	5380.1083	0.0000	1.0000
JC69IG	13	-2677.8469	5382.1917	0.0000	1.0000
JC69I	12	-2679.8150	5384.0562	0.0000	1.0000
JC69	11	-2698.7605	5419.8811	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2565.7472	5171.4943	0.5678	0.5678
GTRIG	21	-2565.6828	5173.3655	0.2228	0.7906
GTRI	20	-2567.3008	5174.6017	0.1201	0.9107
HKYG	16	-2572.0620	5176.1240	0.0561	0.9667
HKYIG	17	-2572.0357	5178.0715	0.0212	0.9879
HKYI	16	-2573.5977	5179.1954	0.0121	1.0000
GTR	19	-2587.7846	5213.5693	0.0000	1.0000
HKY	15	-2592.8312	5215.6624	0.0000	1.0000
SYMG	17	-2613.6627	5261.3254	0.0000	1.0000
SYMIG	18	-2613.6620	5263.3239	0.0000	1.0000
K2PG	13	-2618.6985	5263.3969	0.0000	1.0000
K2PIG	14	-2618.7038	5265.4075	0.0000	1.0000
SYMI	17	-2616.2519	5266.5038	0.0000	1.0000
K2PI	13	-2620.8232	5267.6464	0.0000	1.0000
SYM	16	-2637.2065	5306.4129	0.0000	1.0000
K2P	12	-2641.3808	5306.7617	0.0000	1.0000
F81G	15	-2639.5965	5309.1929	0.0000	1.0000
F81IG	16	-2639.6093	5311.2186	0.0000	1.0000
F81I	15	-2641.2512	5312.5023	0.0000	1.0000
F81	14	-2659.4054	5346.8107	0.0000	1.0000
JC69G	12	-2677.8410	5379.6821	0.0000	1.0000
JC69IG	13	-2677.8469	5381.6938	0.0000	1.0000
JC69I	12	-2679.8150	5383.6300	0.0000	1.0000
JC69	11	-2698.7605	5419.5209	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2572.0620	5249.9381	0.7973	0.7973
HKYI	16	-2573.5977	5253.0096	0.1717	0.9690
HKYIG	17	-2572.0357	5256.4990	0.0300	0.9990
GTRG	20	-2565.7472	5263.7620	0.0008	0.9998
GTRI	20	-2567.3008	5266.8693	0.0002	1.0000
GTRIG	21	-2565.6828	5270.2466	0.0000	1.0000
HKY	15	-2592.8312	5284.8631	0.0000	1.0000
GTR	19	-2587.7846	5301.2236	0.0000	1.0000
K2PG	13	-2618.6985	5323.3709	0.0000	1.0000
K2PI	13	-2620.8232	5327.6204	0.0000	1.0000
K2PIG	14	-2618.7038	5329.9949	0.0000	1.0000
SYMG	17	-2613.6627	5339.7530	0.0000	1.0000
SYMI	17	-2616.2519	5344.9314	0.0000	1.0000
SYMIG	18	-2613.6620	5346.3648	0.0000	1.0000
K2P	12	-2641.3808	5362.1223	0.0000	1.0000
F81G	15	-2639.5965	5378.3937	0.0000	1.0000
SYM	16	-2637.2065	5380.2270	0.0000	1.0000
F81I	15	-2641.2512	5381.7031	0.0000	1.0000
F81IG	16	-2639.6093	5385.0328	0.0000	1.0000
F81	14	-2659.4054	5411.3981	0.0000	1.0000
JC69G	12	-2677.8410	5435.0427	0.0000	1.0000
JC69I	12	-2679.8150	5438.9906	0.0000	1.0000
JC69IG	13	-2677.8469	5441.6678	0.0000	1.0000
JC69	11	-2698.7605	5470.2682	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_21445.phylip = 1 - 745;
 Partition Dummy = 1:591-tomodel-phylip/chr2_21445.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_21445.phylip = 1 - 745;
 Partition Dummy = 1:591-tomodel-phylip/chr2_21445.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_21445.phylip = 1 - 745;
 Partition Dummy = 1:591-tomodel-phylip/chr2_21445.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

