
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:37 04/04/2011

Input data from file "591-tomodel-phylip/chr2_21376.phylip" (7 taxa, 1021 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3203.9877	6447.9755	0.7229	0.7229
GTRIG	21	-3203.9939	6449.9878	0.2643	0.9872
GTRI	20	-3208.2878	6456.5756	0.0098	0.9970
HKYG	16	-3213.8138	6459.6276	0.0021	0.9992
HKYIG	17	-3213.8107	6461.6214	0.0008	0.9999
HKYI	16	-3217.5463	6467.0925	0.0001	1.0000
GTR	19	-3226.7122	6491.4244	0.0000	1.0000
HKY	15	-3235.8140	6501.6281	0.0000	1.0000
SYMG	17	-3249.1286	6532.2572	0.0000	1.0000
K2PG	13	-3253.3496	6532.6991	0.0000	1.0000
SYMIG	18	-3249.1232	6534.2464	0.0000	1.0000
K2PIG	14	-3253.3418	6534.6836	0.0000	1.0000
SYMI	17	-3252.4743	6538.9486	0.0000	1.0000
K2PI	13	-3256.6895	6539.3791	0.0000	1.0000
SYM	16	-3271.1863	6574.3725	0.0000	1.0000
K2P	12	-3275.4895	6574.9790	0.0000	1.0000
F81G	15	-3285.7487	6601.4975	0.0000	1.0000
F81IG	16	-3285.7529	6603.5059	0.0000	1.0000
F81I	15	-3289.0715	6608.1430	0.0000	1.0000
F81	14	-3306.6227	6641.2454	0.0000	1.0000
JC69G	12	-3318.4628	6660.9255	0.0000	1.0000
JC69IG	13	-3318.4680	6662.9361	0.0000	1.0000
JC69I	12	-3321.9692	6667.9384	0.0000	1.0000
JC69	11	-3339.9039	6701.8077	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3213.8138	6538.4842	0.9312	0.9312
HKYIG	17	-3213.8107	6545.4066	0.0292	0.9604
HKYI	16	-3217.5463	6545.9491	0.0223	0.9827
GTRG	20	-3203.9877	6546.5463	0.0165	0.9993
GTRIG	21	-3203.9939	6553.4871	0.0005	0.9998
GTRI	20	-3208.2878	6555.1463	0.0002	1.0000
HKY	15	-3235.8140	6575.5562	0.0000	1.0000
GTR	19	-3226.7122	6585.0667	0.0000	1.0000
K2PG	13	-3253.3496	6596.7701	0.0000	1.0000
K2PI	13	-3256.6895	6603.4501	0.0000	1.0000
K2PIG	14	-3253.3418	6603.6831	0.0000	1.0000
SYMG	17	-3249.1286	6616.0424	0.0000	1.0000
SYMI	17	-3252.4743	6622.7337	0.0000	1.0000
SYMIG	18	-3249.1232	6622.9601	0.0000	1.0000
K2P	12	-3275.4895	6634.1215	0.0000	1.0000
SYM	16	-3271.1863	6653.2291	0.0000	1.0000
F81G	15	-3285.7487	6675.4255	0.0000	1.0000
F81I	15	-3289.0715	6682.0711	0.0000	1.0000
F81IG	16	-3285.7529	6682.3625	0.0000	1.0000
F81	14	-3306.6227	6710.2449	0.0000	1.0000
JC69G	12	-3318.4628	6720.0680	0.0000	1.0000
JC69IG	13	-3318.4680	6727.0071	0.0000	1.0000
JC69I	12	-3321.9692	6727.0809	0.0000	1.0000
JC69	11	-3339.9039	6756.0217	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_21376.phylip = 1 - 1021;
 Partition Dummy = 1:591-tomodel-phylip/chr2_21376.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_21376.phylip = 1 - 1021;
 Partition Dummy = 1:591-tomodel-phylip/chr2_21376.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_21376.phylip = 1 - 1021;
 Partition Dummy = 1:591-tomodel-phylip/chr2_21376.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

