
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:36 04/04/2011

Input data from file "591-tomodel-phylip/chr2_21320.phylip" (7 taxa, 1148 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-4177.7587	8387.5174	0.3443	0.3443
HKYI	16	-4178.1450	8388.2901	0.2340	0.5783
GTRG	20	-4174.5666	8389.1332	0.1535	0.7318
HKYIG	17	-4177.6872	8389.3743	0.1361	0.8678
GTRI	20	-4175.2792	8390.5584	0.0753	0.9431
GTRIG	21	-4174.5587	8391.1174	0.0569	1.0000
SYMG	17	-4200.9619	8435.9238	0.0000	1.0000
SYMI	17	-4201.0671	8436.1343	0.0000	1.0000
SYMIG	18	-4200.7962	8437.5925	0.0000	1.0000
K2PI	13	-4206.0576	8438.1151	0.0000	1.0000
K2PG	13	-4206.1811	8438.3623	0.0000	1.0000
K2PIG	14	-4205.8907	8439.7815	0.0000	1.0000
HKY	15	-4205.5984	8441.1969	0.0000	1.0000
GTR	19	-4202.4199	8442.8397	0.0000	1.0000
SYM	16	-4225.7668	8483.5337	0.0000	1.0000
K2P	12	-4231.4308	8486.8616	0.0000	1.0000
F81I	15	-4275.7780	8581.5560	0.0000	1.0000
F81G	15	-4276.1418	8582.2837	0.0000	1.0000
F81IG	16	-4275.7015	8583.4031	0.0000	1.0000
JC69I	12	-4296.4066	8616.8133	0.0000	1.0000
JC69G	12	-4296.9511	8617.9022	0.0000	1.0000
JC69IG	13	-4296.3787	8618.7574	0.0000	1.0000
F81	14	-4300.4421	8628.8842	0.0000	1.0000
JC69	11	-4320.3441	8662.6883	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-4177.7587	8468.2498	0.5844	0.5844
HKYI	16	-4178.1450	8469.0225	0.3971	0.9815
HKYIG	17	-4177.6872	8475.1525	0.0185	1.0000
GTRG	20	-4174.5666	8490.0488	0.0000	1.0000
GTRI	20	-4175.2792	8491.4739	0.0000	1.0000
GTRIG	21	-4174.5587	8497.0787	0.0000	1.0000
K2PI	13	-4206.0576	8503.7102	0.0000	1.0000
K2PG	13	-4206.1811	8503.9574	0.0000	1.0000
K2PIG	14	-4205.8907	8510.4223	0.0000	1.0000
HKY	15	-4205.5984	8516.8835	0.0000	1.0000
SYMG	17	-4200.9619	8521.7020	0.0000	1.0000
SYMI	17	-4201.0671	8521.9125	0.0000	1.0000
SYMIG	18	-4200.7962	8528.4165	0.0000	1.0000
GTR	19	-4202.4199	8538.7095	0.0000	1.0000
K2P	12	-4231.4308	8547.4110	0.0000	1.0000
SYM	16	-4225.7668	8564.2661	0.0000	1.0000
F81I	15	-4275.7780	8657.2426	0.0000	1.0000
F81G	15	-4276.1418	8657.9703	0.0000	1.0000
F81IG	16	-4275.7015	8664.1355	0.0000	1.0000
JC69I	12	-4296.4066	8677.3626	0.0000	1.0000
JC69G	12	-4296.9511	8678.4515	0.0000	1.0000
JC69IG	13	-4296.3787	8684.3525	0.0000	1.0000
F81	14	-4300.4421	8699.5251	0.0000	1.0000
JC69	11	-4320.3441	8718.1918	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_21320.phylip = 1 - 1148;
 Partition Dummy = 1:591-tomodel-phylip/chr2_21320.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_21320.phylip = 1 - 1148;
 Partition Dummy = 1:591-tomodel-phylip/chr2_21320.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_21320.phylip = 1 - 1148;
 Partition Dummy = 1:591-tomodel-phylip/chr2_21320.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

