
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:35 04/04/2011

Input data from file "591-tomodel-phylip/chr2_21284.phylip" (7 taxa, 931 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2680.7603	5401.5206	0.6507	0.6507
GTRIG	21	-2680.7569	5403.5138	0.2402	0.8909
GTRI	20	-2682.8014	5405.6028	0.0845	0.9754
HKYG	16	-2688.4276	5408.8552	0.0166	0.9921
HKYIG	17	-2688.4032	5410.8065	0.0063	0.9983
HKYI	16	-2690.7295	5413.4590	0.0017	1.0000
GTR	19	-2697.5227	5433.0455	0.0000	1.0000
HKY	15	-2705.3697	5440.7394	0.0000	1.0000
SYMG	17	-2725.9197	5485.8394	0.0000	1.0000
SYMIG	18	-2725.9112	5487.8223	0.0000	1.0000
SYMI	17	-2727.4965	5488.9929	0.0000	1.0000
K2PG	13	-2733.2228	5492.4455	0.0000	1.0000
K2PIG	14	-2733.1963	5494.3926	0.0000	1.0000
K2PI	13	-2735.2534	5496.5069	0.0000	1.0000
F81G	15	-2735.3303	5500.6605	0.0000	1.0000
F81IG	16	-2735.3108	5502.6216	0.0000	1.0000
F81I	15	-2737.4371	5504.8741	0.0000	1.0000
SYM	16	-2742.3981	5516.7961	0.0000	1.0000
K2P	12	-2749.9068	5523.8135	0.0000	1.0000
F81	14	-2750.5985	5529.1969	0.0000	1.0000
JC69G	12	-2774.0738	5572.1476	0.0000	1.0000
JC69IG	13	-2774.0601	5574.1202	0.0000	1.0000
JC69I	12	-2775.9379	5575.8758	0.0000	1.0000
JC69	11	-2789.6675	5601.3349	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2688.4276	5486.2354	0.8799	0.8799
HKYI	16	-2690.7295	5490.8392	0.0880	0.9679
HKYIG	17	-2688.4032	5493.0229	0.0295	0.9975
GTRG	20	-2680.7603	5498.2458	0.0022	0.9996
GTRI	20	-2682.8014	5502.3280	0.0003	0.9999
GTRIG	21	-2680.7569	5505.0753	0.0001	1.0000
HKY	15	-2705.3697	5513.2832	0.0000	1.0000
GTR	19	-2697.5227	5524.9344	0.0000	1.0000
K2PG	13	-2733.2228	5555.3169	0.0000	1.0000
K2PI	13	-2735.2534	5559.3783	0.0000	1.0000
K2PIG	14	-2733.1963	5562.1002	0.0000	1.0000
SYMG	17	-2725.9197	5568.0558	0.0000	1.0000
SYMI	17	-2727.4965	5571.2093	0.0000	1.0000
F81G	15	-2735.3303	5573.2044	0.0000	1.0000
SYMIG	18	-2725.9112	5574.8750	0.0000	1.0000
F81I	15	-2737.4371	5577.4180	0.0000	1.0000
F81IG	16	-2735.3108	5580.0018	0.0000	1.0000
K2P	12	-2749.9068	5581.8486	0.0000	1.0000
SYM	16	-2742.3981	5594.1763	0.0000	1.0000
F81	14	-2750.5985	5596.9046	0.0000	1.0000
JC69G	12	-2774.0738	5630.1827	0.0000	1.0000
JC69I	12	-2775.9379	5633.9109	0.0000	1.0000
JC69IG	13	-2774.0601	5636.9916	0.0000	1.0000
JC69	11	-2789.6675	5654.5338	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_21284.phylip = 1 - 931;
 Partition Dummy = 1:591-tomodel-phylip/chr2_21284.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_21284.phylip = 1 - 931;
 Partition Dummy = 1:591-tomodel-phylip/chr2_21284.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_21284.phylip = 1 - 931;
 Partition Dummy = 1:591-tomodel-phylip/chr2_21284.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

