
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:34 04/04/2011

Input data from file "591-tomodel-phylip/chr2_20139.phylip" (7 taxa, 694 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2340.7034	4722.6549	0.5059	0.5059
GTRI	20	-2341.1650	4723.5782	0.3189	0.8248
GTRIG	21	-2340.7092	4724.7935	0.1737	0.9985
GTR	19	-2347.7758	4734.6792	0.0012	0.9997
HKYG	16	-2353.1279	4739.0593	0.0001	0.9999
HKYI	16	-2353.6302	4740.0640	0.0001	1.0000
HKYIG	17	-2353.1379	4741.1812	0.0000	1.0000
HKY	15	-2360.5810	4751.8700	0.0000	1.0000
SYMG	17	-2390.0428	4814.9910	0.0000	1.0000
SYMI	17	-2390.7457	4816.3967	0.0000	1.0000
SYMIG	18	-2390.0424	4817.0981	0.0000	1.0000
K2PG	13	-2397.8886	4822.3125	0.0000	1.0000
K2PI	13	-2398.5964	4823.7281	0.0000	1.0000
SYM	16	-2395.6508	4824.1051	0.0000	1.0000
K2PIG	14	-2397.8887	4824.3959	0.0000	1.0000
K2P	12	-2403.5550	4831.5682	0.0000	1.0000
F81G	15	-2401.6645	4834.0370	0.0000	1.0000
F81I	15	-2402.0197	4834.7473	0.0000	1.0000
F81IG	16	-2401.6686	4836.1407	0.0000	1.0000
F81	14	-2407.2941	4843.2068	0.0000	1.0000
JC69G	12	-2448.7019	4921.8620	0.0000	1.0000
JC69I	12	-2449.2262	4922.9105	0.0000	1.0000
JC69IG	13	-2448.7019	4923.9391	0.0000	1.0000
JC69	11	-2454.1255	4930.6382	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2340.7034	4721.4068	0.5003	0.5003
GTRI	20	-2341.1650	4722.3301	0.3153	0.8156
GTRIG	21	-2340.7092	4723.4185	0.1830	0.9986
GTR	19	-2347.7758	4733.5516	0.0012	0.9998
HKYG	16	-2353.1279	4738.2557	0.0001	0.9999
HKYI	16	-2353.6302	4739.2605	0.0001	1.0000
HKYIG	17	-2353.1379	4740.2759	0.0000	1.0000
HKY	15	-2360.5810	4751.1620	0.0000	1.0000
SYMG	17	-2390.0428	4814.0857	0.0000	1.0000
SYMI	17	-2390.7457	4815.4914	0.0000	1.0000
SYMIG	18	-2390.0424	4816.0847	0.0000	1.0000
K2PG	13	-2397.8886	4821.7772	0.0000	1.0000
K2PI	13	-2398.5964	4823.1928	0.0000	1.0000
SYM	16	-2395.6508	4823.3015	0.0000	1.0000
K2PIG	14	-2397.8887	4823.7773	0.0000	1.0000
K2P	12	-2403.5550	4831.1101	0.0000	1.0000
F81G	15	-2401.6645	4833.3290	0.0000	1.0000
F81I	15	-2402.0197	4834.0393	0.0000	1.0000
F81IG	16	-2401.6686	4835.3372	0.0000	1.0000
F81	14	-2407.2941	4842.5882	0.0000	1.0000
JC69G	12	-2448.7019	4921.4038	0.0000	1.0000
JC69I	12	-2449.2262	4922.4524	0.0000	1.0000
JC69IG	13	-2448.7019	4923.4038	0.0000	1.0000
JC69	11	-2454.1255	4930.2511	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2353.1279	4810.9353	0.3951	0.3951
HKYI	16	-2353.6302	4811.9400	0.2391	0.6341
GTRG	20	-2340.7034	4812.2562	0.2041	0.8382
GTRI	20	-2341.1650	4813.1795	0.1286	0.9669
HKYIG	17	-2353.1379	4817.4979	0.0148	0.9817
GTRIG	21	-2340.7092	4818.8104	0.0077	0.9894
HKY	15	-2360.5810	4819.2991	0.0060	0.9954
GTR	19	-2347.7758	4819.8586	0.0046	1.0000
K2PG	13	-2397.8886	4880.8293	0.0000	1.0000
K2PI	13	-2398.5964	4882.2449	0.0000	1.0000
K2P	12	-2403.5550	4885.6197	0.0000	1.0000
K2PIG	14	-2397.8887	4887.3719	0.0000	1.0000
SYMG	17	-2390.0428	4891.3077	0.0000	1.0000
SYMI	17	-2390.7457	4892.7134	0.0000	1.0000
SYM	16	-2395.6508	4895.9811	0.0000	1.0000
SYMIG	18	-2390.0424	4897.8492	0.0000	1.0000
F81G	15	-2401.6645	4901.4661	0.0000	1.0000
F81I	15	-2402.0197	4902.1764	0.0000	1.0000
F81	14	-2407.2941	4906.1828	0.0000	1.0000
F81IG	16	-2401.6686	4908.0167	0.0000	1.0000
JC69G	12	-2448.7019	4975.9135	0.0000	1.0000
JC69I	12	-2449.2262	4976.9620	0.0000	1.0000
JC69	11	-2454.1255	4980.2183	0.0000	1.0000
JC69IG	13	-2448.7019	4982.4560	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_20139.phylip = 1 - 694;
 Partition Dummy = 1:591-tomodel-phylip/chr2_20139.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_20139.phylip = 1 - 694;
 Partition Dummy = 1:591-tomodel-phylip/chr2_20139.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_20139.phylip = 1 - 694;
 Partition Dummy = 1:591-tomodel-phylip/chr2_20139.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

