
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:33 04/04/2011

Input data from file "591-tomodel-phylip/chr2_17775.phylip" (7 taxa, 871 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3066.4616	6172.9231	0.6590	0.6590
GTRIG	21	-3066.4616	6174.9232	0.2424	0.9014
GTRI	20	-3069.2349	6178.4699	0.0412	0.9426
HKYG	16	-3073.2939	6178.5879	0.0388	0.9814
HKYIG	17	-3073.2940	6180.5879	0.0143	0.9956
HKYI	16	-3075.4803	6182.9606	0.0044	1.0000
GTR	19	-3088.2908	6214.5816	0.0000	1.0000
HKY	15	-3093.8604	6217.7208	0.0000	1.0000
K2PG	13	-3099.0124	6224.0248	0.0000	1.0000
K2PIG	14	-3099.0124	6226.0249	0.0000	1.0000
K2PI	13	-3100.9356	6227.8713	0.0000	1.0000
SYMG	17	-3097.0263	6228.0526	0.0000	1.0000
SYMIG	18	-3097.0262	6230.0525	0.0000	1.0000
SYMI	17	-3099.0460	6232.0921	0.0000	1.0000
K2P	12	-3119.3751	6262.7501	0.0000	1.0000
SYM	16	-3117.1822	6266.3644	0.0000	1.0000
F81G	15	-3179.0252	6388.0505	0.0000	1.0000
F81IG	16	-3179.0253	6390.0506	0.0000	1.0000
F81I	15	-3180.7263	6391.4527	0.0000	1.0000
JC69G	12	-3197.0675	6418.1351	0.0000	1.0000
JC69IG	13	-3197.0676	6420.1352	0.0000	1.0000
F81	14	-3196.2739	6420.5479	0.0000	1.0000
JC69I	12	-3198.6557	6421.3114	0.0000	1.0000
JC69	11	-3214.3173	6450.6345	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3073.2939	6254.9021	0.8714	0.8714
HKYI	16	-3075.4803	6259.2749	0.0979	0.9693
HKYIG	17	-3073.2940	6261.6718	0.0295	0.9988
GTRG	20	-3066.4616	6268.3160	0.0011	0.9999
GTRI	20	-3069.2349	6273.8627	0.0001	1.0000
GTRIG	21	-3066.4616	6275.0856	0.0000	1.0000
K2PG	13	-3099.0124	6286.0302	0.0000	1.0000
HKY	15	-3093.8604	6289.2654	0.0000	1.0000
K2PI	13	-3100.9356	6289.8766	0.0000	1.0000
K2PIG	14	-3099.0124	6292.7999	0.0000	1.0000
GTR	19	-3088.2908	6305.2048	0.0000	1.0000
SYMG	17	-3097.0263	6309.1365	0.0000	1.0000
SYMI	17	-3099.0460	6313.1760	0.0000	1.0000
SYMIG	18	-3097.0262	6315.9060	0.0000	1.0000
K2P	12	-3119.3751	6319.9858	0.0000	1.0000
SYM	16	-3117.1822	6342.6787	0.0000	1.0000
F81G	15	-3179.0252	6459.5951	0.0000	1.0000
F81I	15	-3180.7263	6462.9973	0.0000	1.0000
F81IG	16	-3179.0253	6466.3649	0.0000	1.0000
JC69G	12	-3197.0675	6475.3708	0.0000	1.0000
JC69I	12	-3198.6557	6478.5471	0.0000	1.0000
JC69IG	13	-3197.0676	6482.1405	0.0000	1.0000
F81	14	-3196.2739	6487.3229	0.0000	1.0000
JC69	11	-3214.3173	6503.1006	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_17775.phylip = 1 - 871;
 Partition Dummy = 1:591-tomodel-phylip/chr2_17775.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_17775.phylip = 1 - 871;
 Partition Dummy = 1:591-tomodel-phylip/chr2_17775.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_17775.phylip = 1 - 871;
 Partition Dummy = 1:591-tomodel-phylip/chr2_17775.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

