
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:30 04/04/2011

Input data from file "591-tomodel-phylip/chr2_13491.phylip" (7 taxa, 747 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2678.2671	5397.6912	0.6446	0.6446
GTRIG	21	-2678.2671	5399.8086	0.2236	0.8682
SYMG	17	-2683.6663	5402.1722	0.0686	0.9368
SYMIG	18	-2683.6663	5404.2722	0.0240	0.9608
HKYG	16	-2685.8504	5404.4459	0.0220	0.9828
HKYIG	17	-2685.8503	5406.5401	0.0077	0.9906
K2PG	13	-2690.2896	5407.0758	0.0059	0.9965
K2PIG	14	-2690.2895	5409.1528	0.0021	0.9986
GTRI	20	-2684.4797	5410.1163	0.0013	0.9999
SYMI	17	-2690.1645	5415.1686	0.0001	1.0000
HKYI	16	-2692.6029	5417.9510	0.0000	1.0000
K2PI	13	-2697.0842	5420.6650	0.0000	1.0000
GTR	19	-2705.3618	5449.7691	0.0000	1.0000
SYM	16	-2710.7577	5454.2606	0.0000	1.0000
HKY	15	-2713.5560	5457.7687	0.0000	1.0000
K2P	12	-2717.9264	5460.2778	0.0000	1.0000
F81G	15	-2735.2613	5501.1793	0.0000	1.0000
F81IG	16	-2735.2614	5503.2680	0.0000	1.0000
JC69G	12	-2740.4531	5505.3312	0.0000	1.0000
JC69IG	13	-2740.4531	5507.4028	0.0000	1.0000
F81I	15	-2740.2596	5511.1757	0.0000	1.0000
JC69I	12	-2745.5727	5515.5705	0.0000	1.0000
F81	14	-2758.8166	5546.2070	0.0000	1.0000
JC69	11	-2764.1131	5550.5854	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2678.2671	5396.5342	0.6488	0.6488
GTRIG	21	-2678.2671	5398.5341	0.2387	0.8875
SYMG	17	-2683.6663	5401.3327	0.0589	0.9464
SYMIG	18	-2683.6663	5403.3327	0.0217	0.9681
HKYG	16	-2685.8504	5403.7007	0.0180	0.9861
HKYIG	17	-2685.8503	5405.7006	0.0066	0.9927
K2PG	13	-2690.2896	5406.5792	0.0043	0.9970
K2PIG	14	-2690.2895	5408.5791	0.0016	0.9986
GTRI	20	-2684.4797	5408.9593	0.0013	0.9999
SYMI	17	-2690.1645	5414.3291	0.0001	1.0000
HKYI	16	-2692.6029	5417.2058	0.0000	1.0000
K2PI	13	-2697.0842	5420.1684	0.0000	1.0000
GTR	19	-2705.3618	5448.7237	0.0000	1.0000
SYM	16	-2710.7577	5453.5154	0.0000	1.0000
HKY	15	-2713.5560	5457.1121	0.0000	1.0000
K2P	12	-2717.9264	5459.8528	0.0000	1.0000
F81G	15	-2735.2613	5500.5227	0.0000	1.0000
F81IG	16	-2735.2614	5502.5228	0.0000	1.0000
JC69G	12	-2740.4531	5504.9061	0.0000	1.0000
JC69IG	13	-2740.4531	5506.9063	0.0000	1.0000
F81I	15	-2740.2596	5510.5191	0.0000	1.0000
JC69I	12	-2745.5727	5515.1455	0.0000	1.0000
F81	14	-2758.8166	5545.6332	0.0000	1.0000
JC69	11	-2764.1131	5550.2263	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-2690.2896	5466.5881	0.9584	0.9584
K2PIG	14	-2690.2895	5473.2040	0.0351	0.9934
HKYG	16	-2685.8504	5477.5578	0.0040	0.9974
SYMG	17	-2683.6663	5479.8058	0.0013	0.9987
K2PI	13	-2697.0842	5480.1773	0.0011	0.9998
HKYIG	17	-2685.8503	5484.1737	0.0001	0.9999
SYMIG	18	-2683.6663	5486.4219	0.0000	1.0000
GTRG	20	-2678.2671	5488.8555	0.0000	1.0000
HKYI	16	-2692.6029	5491.0629	0.0000	1.0000
SYMI	17	-2690.1645	5492.8022	0.0000	1.0000
GTRIG	21	-2678.2671	5495.4715	0.0000	1.0000
GTRI	20	-2684.4797	5501.2806	0.0000	1.0000
K2P	12	-2717.9264	5515.2455	0.0000	1.0000
HKY	15	-2713.5560	5526.3530	0.0000	1.0000
SYM	16	-2710.7577	5527.3725	0.0000	1.0000
GTR	19	-2705.3618	5536.4289	0.0000	1.0000
JC69G	12	-2740.4531	5560.2989	0.0000	1.0000
JC69IG	13	-2740.4531	5566.9151	0.0000	1.0000
F81G	15	-2735.2613	5569.7637	0.0000	1.0000
JC69I	12	-2745.5727	5570.5382	0.0000	1.0000
F81IG	16	-2735.2614	5576.3799	0.0000	1.0000
F81I	15	-2740.2596	5579.7601	0.0000	1.0000
JC69	11	-2764.1131	5601.0030	0.0000	1.0000
F81	14	-2758.8166	5610.2581	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_13491.phylip = 1 - 747;
 Partition Dummy = 1:591-tomodel-phylip/chr2_13491.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_13491.phylip = 1 - 747;
 Partition Dummy = 1:591-tomodel-phylip/chr2_13491.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_13491.phylip = 1 - 747;
 Partition Dummy = 1:591-tomodel-phylip/chr2_13491.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

