
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:28 04/04/2011

Input data from file "591-tomodel-phylip/chr2_13030.phylip" (7 taxa, 885 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2532.5935	5105.1869	0.4696	0.4696
GTRI	20	-2532.8652	5105.7305	0.3578	0.8275
GTRIG	21	-2532.5947	5107.1895	0.1725	1.0000
HKYI	16	-2547.9633	5127.9266	0.0000	1.0000
HKYG	16	-2548.2168	5128.4336	0.0000	1.0000
HKYIG	17	-2547.9664	5129.9329	0.0000	1.0000
GTR	19	-2548.3188	5134.6377	0.0000	1.0000
SYMI	17	-2559.1429	5152.2858	0.0000	1.0000
SYMG	17	-2559.5003	5153.0006	0.0000	1.0000
SYMIG	18	-2559.1498	5154.2997	0.0000	1.0000
HKY	15	-2563.1570	5156.3140	0.0000	1.0000
K2PI	13	-2567.9698	5161.9396	0.0000	1.0000
K2PG	13	-2568.4359	5162.8719	0.0000	1.0000
K2PIG	14	-2567.9801	5163.9603	0.0000	1.0000
SYM	16	-2574.2150	5180.4299	0.0000	1.0000
K2P	12	-2583.4196	5190.8391	0.0000	1.0000
F81I	15	-2592.9047	5215.8094	0.0000	1.0000
F81G	15	-2593.1943	5216.3887	0.0000	1.0000
F81IG	16	-2592.9099	5217.8197	0.0000	1.0000
F81	14	-2607.0354	5242.0707	0.0000	1.0000
JC69I	12	-2609.0900	5242.1800	0.0000	1.0000
JC69G	12	-2609.4852	5242.9703	0.0000	1.0000
JC69IG	13	-2609.0988	5244.1976	0.0000	1.0000
JC69	11	-2623.4054	5268.8108	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-2532.5935	5200.8987	0.4773	0.4773
GTRI	20	-2532.8652	5201.4423	0.3637	0.8410
HKYI	16	-2547.9633	5204.4960	0.0790	0.9200
HKYG	16	-2548.2168	5205.0030	0.0613	0.9813
GTRIG	21	-2532.5947	5207.6868	0.0160	0.9973
HKYIG	17	-2547.9664	5211.2879	0.0026	1.0000
K2PI	13	-2567.9698	5224.1522	0.0000	1.0000
K2PG	13	-2568.4359	5225.0845	0.0000	1.0000
GTR	19	-2548.3188	5225.5638	0.0000	1.0000
HKY	15	-2563.1570	5228.0979	0.0000	1.0000
K2PIG	14	-2567.9801	5230.9585	0.0000	1.0000
SYMI	17	-2559.1429	5233.6408	0.0000	1.0000
SYMG	17	-2559.5003	5234.3556	0.0000	1.0000
SYMIG	18	-2559.1498	5240.4403	0.0000	1.0000
K2P	12	-2583.4196	5248.2662	0.0000	1.0000
SYM	16	-2574.2150	5256.9993	0.0000	1.0000
F81I	15	-2592.9047	5287.5932	0.0000	1.0000
F81G	15	-2593.1943	5288.1725	0.0000	1.0000
F81IG	16	-2592.9099	5294.3891	0.0000	1.0000
JC69I	12	-2609.0900	5299.6071	0.0000	1.0000
JC69G	12	-2609.4852	5300.3974	0.0000	1.0000
JC69IG	13	-2609.0988	5306.4103	0.0000	1.0000
F81	14	-2607.0354	5309.0689	0.0000	1.0000
JC69	11	-2623.4054	5321.4523	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_13030.phylip = 1 - 885;
 Partition Dummy = 1:591-tomodel-phylip/chr2_13030.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_13030.phylip = 1 - 885;
 Partition Dummy = 1:591-tomodel-phylip/chr2_13030.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_13030.phylip = 1 - 885;
 Partition Dummy = 1:591-tomodel-phylip/chr2_13030.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

