
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:27 04/04/2011

Input data from file "591-tomodel-phylip/chr2_12041.phylip" (7 taxa, 681 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: SYMG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1958.0865	3957.4456	0.3188	0.3188
GTRIG	21	-1957.3083	3958.0188	0.2394	0.5582
SYMG	17	-1961.6060	3958.1351	0.2258	0.7840
SYMIG	18	-1960.9187	3958.8706	0.1564	0.9404
GTRI	20	-1960.3824	3962.0376	0.0321	0.9725
SYMI	17	-1963.7172	3962.3574	0.0273	0.9998
HKYG	16	-1970.5227	3973.8647	0.0001	0.9999
HKYIG	17	-1969.7424	3974.4079	0.0001	1.0000
K2PG	13	-1975.3861	3977.3180	0.0000	1.0000
HKYI	16	-1972.5229	3977.8650	0.0000	1.0000
K2PIG	14	-1974.6636	3977.9578	0.0000	1.0000
K2PI	13	-1977.2671	3981.0800	0.0000	1.0000
F81G	15	-1988.6653	4008.0524	0.0000	1.0000
F81IG	16	-1988.0659	4008.9510	0.0000	1.0000
JC69G	12	-1993.3954	4011.2579	0.0000	1.0000
F81I	15	-1990.5695	4011.8608	0.0000	1.0000
GTR	19	-1986.4363	4012.0223	0.0000	1.0000
SYM	16	-1989.6944	4012.2082	0.0000	1.0000
JC69IG	13	-1992.8348	4012.2153	0.0000	1.0000
JC69I	12	-1995.2188	4014.9047	0.0000	1.0000
HKY	15	-1999.0597	4028.8413	0.0000	1.0000
K2P	12	-2003.6883	4031.8436	0.0000	1.0000
F81	14	-2015.1906	4059.0119	0.0000	1.0000
JC69	11	-2019.7836	4061.9618	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1958.0865	3956.1729	0.3329	0.3329
GTRIG	21	-1957.3083	3956.6167	0.2666	0.5995
SYMG	17	-1961.6060	3957.2120	0.1980	0.7975
SYMIG	18	-1960.9187	3957.8373	0.1448	0.9424
GTRI	20	-1960.3824	3960.7649	0.0335	0.9759
SYMI	17	-1963.7172	3961.4344	0.0240	0.9998
HKYG	16	-1970.5227	3973.0454	0.0001	0.9999
HKYIG	17	-1969.7424	3973.4848	0.0001	1.0000
K2PG	13	-1975.3861	3976.7722	0.0000	1.0000
HKYI	16	-1972.5229	3977.0457	0.0000	1.0000
K2PIG	14	-1974.6636	3977.3272	0.0000	1.0000
K2PI	13	-1977.2671	3980.5343	0.0000	1.0000
F81G	15	-1988.6653	4007.3306	0.0000	1.0000
F81IG	16	-1988.0659	4008.1317	0.0000	1.0000
JC69G	12	-1993.3954	4010.7908	0.0000	1.0000
GTR	19	-1986.4363	4010.8725	0.0000	1.0000
F81I	15	-1990.5695	4011.1390	0.0000	1.0000
SYM	16	-1989.6944	4011.3889	0.0000	1.0000
JC69IG	13	-1992.8348	4011.6696	0.0000	1.0000
JC69I	12	-1995.2188	4014.4376	0.0000	1.0000
HKY	15	-1999.0597	4028.1195	0.0000	1.0000
K2P	12	-2003.6883	4031.3765	0.0000	1.0000
F81	14	-2015.1906	4058.3813	0.0000	1.0000
JC69	11	-2019.7836	4061.5672	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
SYMG	17	-1961.6060	4034.1126	0.5570	0.5570
K2PG	13	-1975.3861	4035.5785	0.2676	0.8246
SYMI	17	-1963.7172	4038.3349	0.0674	0.8920
SYMIG	18	-1960.9187	4039.2614	0.0424	0.9345
K2PI	13	-1977.2671	4039.3406	0.0408	0.9752
K2PIG	14	-1974.6636	4040.6570	0.0211	0.9964
HKYG	16	-1970.5227	4045.4224	0.0019	0.9983
GTRG	20	-1958.0865	4046.6441	0.0011	0.9994
HKYI	16	-1972.5229	4049.4227	0.0003	0.9996
HKYIG	17	-1969.7424	4050.3853	0.0002	0.9998
GTRI	20	-1960.3824	4051.2361	0.0001	0.9999
GTRIG	21	-1957.3083	4051.6115	0.0001	1.0000
JC69G	12	-1993.3954	4065.0736	0.0000	1.0000
JC69I	12	-1995.2188	4068.7203	0.0000	1.0000
JC69IG	13	-1992.8348	4070.4759	0.0000	1.0000
F81G	15	-1988.6653	4075.1840	0.0000	1.0000
F81I	15	-1990.5695	4078.9924	0.0000	1.0000
F81IG	16	-1988.0659	4080.5087	0.0000	1.0000
SYM	16	-1989.6944	4083.7659	0.0000	1.0000
K2P	12	-2003.6883	4085.6593	0.0000	1.0000
HKY	15	-1999.0597	4095.9729	0.0000	1.0000
GTR	19	-1986.4363	4096.8202	0.0000	1.0000
JC69	11	-2019.7836	4111.3264	0.0000	1.0000
F81	14	-2015.1906	4121.7111	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_12041.phylip = 1 - 681;
 Partition Dummy = 1:591-tomodel-phylip/chr2_12041.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_12041.phylip = 1 - 681;
 Partition Dummy = 1:591-tomodel-phylip/chr2_12041.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (SYMG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_12041.phylip = 1 - 681;
 Partition Dummy = 1:591-tomodel-phylip/chr2_12041.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Fixed(Equal);
END;


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End of Output

