
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:26 04/04/2011

Input data from file "591-tomodel-phylip/chr2_11736.phylip" (7 taxa, 872 characters)

Minimum AIC  model: GTRIG
Minimum AICc model: GTRIG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRIG	21	-2169.1444	4380.2889	0.6305	0.6305
GTRG	20	-2170.9077	4381.8155	0.2939	0.9244
GTRI	20	-2172.2701	4384.5402	0.0753	0.9997
HKYIG	17	-2181.3872	4396.7744	0.0002	0.9998
HKYG	16	-2182.6485	4397.2970	0.0001	0.9999
HKYI	16	-2183.5352	4399.0704	0.0001	1.0000
SYMIG	18	-2195.6050	4427.2100	0.0000	1.0000
SYMG	17	-2197.0927	4428.1854	0.0000	1.0000
SYMI	17	-2198.0975	4430.1949	0.0000	1.0000
K2PIG	14	-2202.2321	4432.4641	0.0000	1.0000
K2PG	13	-2203.4838	4432.9677	0.0000	1.0000
K2PI	13	-2204.2799	4434.5598	0.0000	1.0000
GTR	19	-2206.4127	4450.8253	0.0000	1.0000
F81IG	16	-2209.7830	4451.5660	0.0000	1.0000
F81G	15	-2210.8050	4451.6101	0.0000	1.0000
F81I	15	-2211.4676	4452.9353	0.0000	1.0000
HKY	15	-2217.7310	4465.4619	0.0000	1.0000
JC69IG	13	-2228.4441	4482.8881	0.0000	1.0000
JC69G	12	-2229.5214	4483.0428	0.0000	1.0000
JC69I	12	-2230.2006	4484.4012	0.0000	1.0000
SYM	16	-2233.2847	4498.5695	0.0000	1.0000
K2P	12	-2238.6273	4501.2545	0.0000	1.0000
F81	14	-2244.4525	4516.9049	0.0000	1.0000
JC69	11	-2263.5289	4549.0578	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2182.6485	4473.6297	0.5644	0.5644
HKYI	16	-2183.5352	4475.4030	0.2326	0.7970
GTRG	20	-2170.9077	4477.2312	0.0932	0.8902
HKYIG	17	-2181.3872	4477.8779	0.0675	0.9577
GTRI	20	-2172.2701	4479.9559	0.0239	0.9816
GTRIG	21	-2169.1444	4480.4755	0.0184	1.0000
K2PG	13	-2203.4838	4494.9879	0.0000	1.0000
K2PI	13	-2204.2799	4496.5801	0.0000	1.0000
K2PIG	14	-2202.2321	4499.2552	0.0000	1.0000
SYMG	17	-2197.0927	4509.2888	0.0000	1.0000
SYMI	17	-2198.0975	4511.2983	0.0000	1.0000
SYMIG	18	-2195.6050	4513.0842	0.0000	1.0000
F81G	15	-2210.8050	4523.1719	0.0000	1.0000
F81I	15	-2211.4676	4524.4971	0.0000	1.0000
F81IG	16	-2209.7830	4527.8986	0.0000	1.0000
HKY	15	-2217.7310	4537.0238	0.0000	1.0000
JC69G	12	-2229.5214	4540.2923	0.0000	1.0000
GTR	19	-2206.4127	4541.4703	0.0000	1.0000
JC69I	12	-2230.2006	4541.6507	0.0000	1.0000
JC69IG	13	-2228.4441	4544.9084	0.0000	1.0000
K2P	12	-2238.6273	4558.5040	0.0000	1.0000
SYM	16	-2233.2847	4574.9021	0.0000	1.0000
F81	14	-2244.4525	4583.6960	0.0000	1.0000
JC69	11	-2263.5289	4601.5365	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRIG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_11736.phylip = 1 - 872;
 Partition Dummy = 1:591-tomodel-phylip/chr2_11736.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRIG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_11736.phylip = 1 - 872;
 Partition Dummy = 1:591-tomodel-phylip/chr2_11736.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_11736.phylip = 1 - 872;
 Partition Dummy = 1:591-tomodel-phylip/chr2_11736.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

