
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:25 04/04/2011

Input data from file "591-tomodel-phylip/chr2_11725.phylip" (7 taxa, 577 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2012.0886	4065.6879	0.6821	0.6821
GTRIG	21	-2012.0910	4067.8468	0.2318	0.9139
GTRI	20	-2014.1700	4069.8508	0.0851	0.9990
SYMG	17	-2022.4759	4080.0467	0.0005	0.9995
SYMIG	18	-2022.4764	4082.1787	0.0002	0.9997
HKYG	16	-2024.7916	4082.5547	0.0001	0.9999
HKYIG	17	-2024.7880	4084.6708	0.0001	0.9999
SYMI	17	-2024.8028	4084.7005	0.0001	1.0000
HKYI	16	-2026.5573	4086.0860	0.0000	1.0000
K2PG	13	-2031.4815	4089.6096	0.0000	1.0000
K2PIG	14	-2031.4783	4091.7039	0.0000	1.0000
K2PI	13	-2033.4516	4093.5498	0.0000	1.0000
GTR	19	-2045.7288	4130.8220	0.0000	1.0000
SYM	16	-2052.9600	4138.8915	0.0000	1.0000
F81G	15	-2054.3735	4139.6026	0.0000	1.0000
F81IG	16	-2054.3800	4141.7314	0.0000	1.0000
F81I	15	-2055.5038	4141.8632	0.0000	1.0000
HKY	15	-2055.6016	4142.0588	0.0000	1.0000
JC69G	12	-2059.1465	4142.8463	0.0000	1.0000
JC69IG	13	-2059.1530	4144.9525	0.0000	1.0000
JC69I	12	-2060.3748	4145.3028	0.0000	1.0000
K2P	12	-2061.1705	4146.8942	0.0000	1.0000
F81	14	-2082.0770	4192.9013	0.0000	1.0000
JC69	11	-2086.3479	4195.1630	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2012.0886	4064.1771	0.6698	0.6698
GTRIG	21	-2012.0910	4066.1820	0.2458	0.9157
GTRI	20	-2014.1700	4068.3400	0.0836	0.9992
SYMG	17	-2022.4759	4078.9519	0.0004	0.9996
SYMIG	18	-2022.4764	4080.9529	0.0002	0.9998
HKYG	16	-2024.7916	4081.5833	0.0001	0.9999
HKYIG	17	-2024.7880	4083.5760	0.0000	0.9999
SYMI	17	-2024.8028	4083.6056	0.0000	1.0000
HKYI	16	-2026.5573	4085.1146	0.0000	1.0000
K2PG	13	-2031.4815	4088.9631	0.0000	1.0000
K2PIG	14	-2031.4783	4090.9566	0.0000	1.0000
K2PI	13	-2033.4516	4092.9033	0.0000	1.0000
GTR	19	-2045.7288	4129.4576	0.0000	1.0000
SYM	16	-2052.9600	4137.9201	0.0000	1.0000
F81G	15	-2054.3735	4138.7470	0.0000	1.0000
F81IG	16	-2054.3800	4140.7600	0.0000	1.0000
F81I	15	-2055.5038	4141.0075	0.0000	1.0000
HKY	15	-2055.6016	4141.2032	0.0000	1.0000
JC69G	12	-2059.1465	4142.2931	0.0000	1.0000
JC69IG	13	-2059.1530	4144.3060	0.0000	1.0000
JC69I	12	-2060.3748	4144.7496	0.0000	1.0000
K2P	12	-2061.1705	4146.3410	0.0000	1.0000
F81	14	-2082.0770	4192.1540	0.0000	1.0000
JC69	11	-2086.3479	4194.6958	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-2031.4815	4145.6150	0.7428	0.7428
K2PI	13	-2033.4516	4149.5552	0.1036	0.8464
HKYG	16	-2024.7916	4151.3088	0.0431	0.8895
GTRG	20	-2012.0886	4151.3340	0.0426	0.9320
K2PIG	14	-2031.4783	4151.9664	0.0310	0.9630
SYMG	17	-2022.4759	4153.0352	0.0182	0.9812
HKYI	16	-2026.5573	4154.8400	0.0074	0.9886
GTRI	20	-2014.1700	4155.4968	0.0053	0.9939
HKYIG	17	-2024.7880	4157.6593	0.0018	0.9957
SYMI	17	-2024.8028	4157.6890	0.0018	0.9975
GTRIG	21	-2012.0910	4157.6967	0.0018	0.9992
SYMIG	18	-2022.4764	4159.3940	0.0008	1.0000
JC69G	12	-2059.1465	4194.5872	0.0000	1.0000
JC69I	12	-2060.3748	4197.0437	0.0000	1.0000
K2P	12	-2061.1705	4198.6351	0.0000	1.0000
JC69IG	13	-2059.1530	4200.9579	0.0000	1.0000
F81G	15	-2054.3735	4204.1147	0.0000	1.0000
F81I	15	-2055.5038	4206.3752	0.0000	1.0000
HKY	15	-2055.6016	4206.5708	0.0000	1.0000
SYM	16	-2052.9600	4207.6456	0.0000	1.0000
F81IG	16	-2054.3800	4210.4854	0.0000	1.0000
GTR	19	-2045.7288	4212.2566	0.0000	1.0000
JC69	11	-2086.3479	4242.6320	0.0000	1.0000
F81	14	-2082.0770	4253.1638	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_11725.phylip = 1 - 577;
 Partition Dummy = 1:591-tomodel-phylip/chr2_11725.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_11725.phylip = 1 - 577;
 Partition Dummy = 1:591-tomodel-phylip/chr2_11725.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_11725.phylip = 1 - 577;
 Partition Dummy = 1:591-tomodel-phylip/chr2_11725.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

