
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:25 04/04/2011

Input data from file "591-tomodel-phylip/chr2_11516.phylip" (7 taxa, 1097 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3075.3294	6190.6588	0.5418	0.5418
GTRI	20	-3076.0705	6192.1410	0.2582	0.8000
GTRIG	21	-3075.3261	6192.6521	0.2000	0.9999
GTR	19	-3086.0456	6210.0912	0.0000	1.0000
HKYG	16	-3089.1950	6210.3901	0.0000	1.0000
HKYI	16	-3090.0776	6212.1553	0.0000	1.0000
HKYIG	17	-3089.2112	6212.4225	0.0000	1.0000
HKY	15	-3100.1502	6230.3004	0.0000	1.0000
SYMG	17	-3100.1505	6234.3010	0.0000	1.0000
SYMI	17	-3101.0254	6236.0509	0.0000	1.0000
SYMIG	18	-3100.1603	6236.3205	0.0000	1.0000
K2PG	13	-3108.7073	6243.4145	0.0000	1.0000
K2PI	13	-3109.7072	6245.4145	0.0000	1.0000
K2PIG	14	-3108.7080	6245.4159	0.0000	1.0000
SYM	16	-3110.2472	6252.4943	0.0000	1.0000
F81G	15	-3115.9860	6261.9720	0.0000	1.0000
K2P	12	-3119.4127	6262.8254	0.0000	1.0000
F81I	15	-3116.9815	6263.9629	0.0000	1.0000
F81IG	16	-3115.9877	6263.9753	0.0000	1.0000
F81	14	-3127.9275	6283.8550	0.0000	1.0000
JC69G	12	-3133.4839	6290.9678	0.0000	1.0000
JC69IG	13	-3133.4884	6292.9769	0.0000	1.0000
JC69I	12	-3134.5149	6293.0299	0.0000	1.0000
JC69	11	-3143.3666	6308.7332	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3089.1950	6290.3954	0.3621	0.3621
GTRG	20	-3075.3294	6290.6655	0.3164	0.6785
GTRI	20	-3076.0705	6292.1476	0.1508	0.8293
HKYI	16	-3090.0776	6292.1606	0.1498	0.9792
HKYIG	17	-3089.2112	6297.4282	0.0108	0.9899
GTRIG	21	-3075.3261	6297.6591	0.0096	0.9995
GTR	19	-3086.0456	6305.0975	0.0002	0.9997
HKY	15	-3100.1502	6305.3054	0.0002	0.9999
K2PG	13	-3108.7073	6308.4189	0.0000	1.0000
K2PI	13	-3109.7072	6310.4188	0.0000	1.0000
K2PIG	14	-3108.7080	6315.4206	0.0000	1.0000
SYMG	17	-3100.1505	6319.3067	0.0000	1.0000
SYMI	17	-3101.0254	6321.0566	0.0000	1.0000
K2P	12	-3119.4127	6322.8294	0.0000	1.0000
SYMIG	18	-3100.1603	6326.3265	0.0000	1.0000
SYM	16	-3110.2472	6332.4997	0.0000	1.0000
F81G	15	-3115.9860	6336.9770	0.0000	1.0000
F81I	15	-3116.9815	6338.9679	0.0000	1.0000
F81IG	16	-3115.9877	6343.9807	0.0000	1.0000
JC69G	12	-3133.4839	6350.9718	0.0000	1.0000
JC69I	12	-3134.5149	6353.0339	0.0000	1.0000
F81	14	-3127.9275	6353.8597	0.0000	1.0000
JC69IG	13	-3133.4884	6357.9812	0.0000	1.0000
JC69	11	-3143.3666	6363.7369	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_11516.phylip = 1 - 1097;
 Partition Dummy = 1:591-tomodel-phylip/chr2_11516.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_11516.phylip = 1 - 1097;
 Partition Dummy = 1:591-tomodel-phylip/chr2_11516.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr2_11516.phylip = 1 - 1097;
 Partition Dummy = 1:591-tomodel-phylip/chr2_11516.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

