
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:32 04/04/2011

Input data from file "591-tomodel-phylip/chr24_2269.phylip" (7 taxa, 1062 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-4016.4538	8072.9075	0.5272	0.5272
GTRIG	21	-4016.4549	8074.9098	0.1937	0.7209
HKYG	16	-4021.6587	8075.3173	0.1580	0.8789
HKYIG	17	-4021.6652	8077.3304	0.0577	0.9366
SYMG	17	-4022.6094	8079.2188	0.0225	0.9591
K2PG	13	-4027.1921	8080.3841	0.0125	0.9716
GTRI	20	-4020.3592	8080.7184	0.0106	0.9822
SYMIG	18	-4022.6255	8081.2509	0.0081	0.9904
K2PIG	14	-4027.1932	8082.3865	0.0046	0.9950
HKYI	16	-4025.3276	8082.6552	0.0040	0.9990
SYMI	17	-4026.2008	8086.4016	0.0006	0.9996
K2PI	13	-4030.7428	8087.4856	0.0004	1.0000
GTR	19	-4075.2884	8188.5767	0.0000	1.0000
HKY	15	-4082.8429	8195.6858	0.0000	1.0000
SYM	16	-4082.1972	8196.3943	0.0000	1.0000
K2P	12	-4089.8217	8203.6434	0.0000	1.0000
F81G	15	-4131.7928	8293.5856	0.0000	1.0000
F81IG	16	-4131.8074	8295.6148	0.0000	1.0000
F81I	15	-4134.6032	8299.2064	0.0000	1.0000
JC69G	12	-4139.9799	8303.9599	0.0000	1.0000
JC69IG	13	-4140.0037	8306.0073	0.0000	1.0000
JC69I	12	-4142.7377	8309.4753	0.0000	1.0000
F81	14	-4188.4156	8404.8312	0.0000	1.0000
JC69	11	-4195.9402	8413.8803	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-4027.1921	8144.9670	0.9371	0.9371
K2PIG	14	-4027.1932	8151.9372	0.0287	0.9658
K2PI	13	-4030.7428	8152.0684	0.0269	0.9927
HKYG	16	-4021.6587	8154.8039	0.0069	0.9995
HKYIG	17	-4021.6652	8161.7849	0.0002	0.9997
HKYI	16	-4025.3276	8162.1417	0.0002	0.9999
SYMG	17	-4022.6094	8163.6733	0.0001	1.0000
SYMIG	18	-4022.6255	8170.6733	0.0000	1.0000
SYMI	17	-4026.2008	8170.8561	0.0000	1.0000
GTRG	20	-4016.4538	8172.2657	0.0000	1.0000
GTRIG	21	-4016.4549	8179.2359	0.0000	1.0000
GTRI	20	-4020.3592	8180.0766	0.0000	1.0000
K2P	12	-4089.8217	8263.2584	0.0000	1.0000
HKY	15	-4082.8429	8270.2044	0.0000	1.0000
SYM	16	-4082.1972	8275.8809	0.0000	1.0000
GTR	19	-4075.2884	8282.9670	0.0000	1.0000
JC69G	12	-4139.9799	8363.5748	0.0000	1.0000
F81G	15	-4131.7928	8368.1042	0.0000	1.0000
JC69I	12	-4142.7377	8369.0902	0.0000	1.0000
JC69IG	13	-4140.0037	8370.5902	0.0000	1.0000
F81I	15	-4134.6032	8373.7250	0.0000	1.0000
F81IG	16	-4131.8074	8375.1013	0.0000	1.0000
JC69	11	-4195.9402	8468.5273	0.0000	1.0000
F81	14	-4188.4156	8474.3819	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr24_2269.phylip = 1 - 1062;
 Partition Dummy = 1:591-tomodel-phylip/chr24_2269.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr24_2269.phylip = 1 - 1062;
 Partition Dummy = 1:591-tomodel-phylip/chr24_2269.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr24_2269.phylip = 1 - 1062;
 Partition Dummy = 1:591-tomodel-phylip/chr24_2269.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

