
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:31 04/04/2011

Input data from file "591-tomodel-phylip/chr22_640.phylip" (7 taxa, 612 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYG	16	-1755.0914	3543.0971	0.4221	0.4221
HKYI	16	-1755.9632	3544.8406	0.1765	0.5986
GTRG	20	-1751.8675	3545.1564	0.1507	0.7494
HKYIG	17	-1755.0826	3545.1955	0.1478	0.8972
GTRIG	21	-1751.8647	3547.2955	0.0517	0.9490
GTRI	20	-1752.9524	3547.3261	0.0509	0.9999
HKY	15	-1764.8475	3560.5004	0.0001	1.0000
GTR	19	-1761.4938	3562.2714	0.0000	1.0000
K2PG	13	-1782.0311	3590.6710	0.0000	1.0000
K2PI	13	-1782.7966	3592.2020	0.0000	1.0000
K2PIG	14	-1782.0258	3592.7552	0.0000	1.0000
SYMG	17	-1778.8855	3592.8013	0.0000	1.0000
SYMI	17	-1779.6986	3594.4275	0.0000	1.0000
SYMIG	18	-1778.8766	3594.9067	0.0000	1.0000
K2P	12	-1792.2492	3609.0192	0.0000	1.0000
SYM	16	-1789.1823	3611.2789	0.0000	1.0000
F81G	15	-1798.4852	3627.7758	0.0000	1.0000
F81I	15	-1799.2194	3629.2441	0.0000	1.0000
F81IG	16	-1798.4826	3629.8795	0.0000	1.0000
F81	14	-1807.1768	3643.0571	0.0000	1.0000
JC69G	12	-1822.1161	3668.7531	0.0000	1.0000
JC69I	12	-1822.7881	3670.0971	0.0000	1.0000
JC69IG	13	-1822.1118	3670.8324	0.0000	1.0000
JC69	11	-1831.3345	3685.1089	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-1755.0914	3542.1828	0.3883	0.3883
GTRG	20	-1751.8675	3543.7351	0.1787	0.5670
HKYI	16	-1755.9632	3543.9263	0.1624	0.7295
HKYIG	17	-1755.0826	3544.1652	0.1441	0.8736
GTRIG	21	-1751.8647	3545.7294	0.0659	0.9395
GTRI	20	-1752.9524	3545.9048	0.0604	0.9999
HKY	15	-1764.8475	3559.6950	0.0001	1.0000
GTR	19	-1761.4938	3560.9876	0.0000	1.0000
K2PG	13	-1782.0311	3590.0623	0.0000	1.0000
K2PI	13	-1782.7966	3591.5933	0.0000	1.0000
SYMG	17	-1778.8855	3591.7710	0.0000	1.0000
K2PIG	14	-1782.0258	3592.0517	0.0000	1.0000
SYMI	17	-1779.6986	3593.3972	0.0000	1.0000
SYMIG	18	-1778.8766	3593.7532	0.0000	1.0000
K2P	12	-1792.2492	3608.4983	0.0000	1.0000
SYM	16	-1789.1823	3610.3646	0.0000	1.0000
F81G	15	-1798.4852	3626.9705	0.0000	1.0000
F81I	15	-1799.2194	3628.4387	0.0000	1.0000
F81IG	16	-1798.4826	3628.9652	0.0000	1.0000
F81	14	-1807.1768	3642.3536	0.0000	1.0000
JC69G	12	-1822.1161	3668.2322	0.0000	1.0000
JC69I	12	-1822.7881	3669.5762	0.0000	1.0000
JC69IG	13	-1822.1118	3670.2237	0.0000	1.0000
JC69	11	-1831.3345	3684.6689	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1755.0914	3612.8505	0.6847	0.6847
HKYI	16	-1755.9632	3614.5941	0.2863	0.9710
HKYIG	17	-1755.0826	3619.2496	0.0279	0.9990
HKY	15	-1764.8475	3625.9460	0.0010	0.9999
GTRG	20	-1751.8675	3632.0697	0.0000	1.0000
GTRI	20	-1752.9524	3634.2395	0.0000	1.0000
GTRIG	21	-1751.8647	3638.4808	0.0000	1.0000
GTR	19	-1761.4938	3644.9055	0.0000	1.0000
K2PG	13	-1782.0311	3647.4798	0.0000	1.0000
K2PI	13	-1782.7966	3649.0108	0.0000	1.0000
K2PIG	14	-1782.0258	3653.8859	0.0000	1.0000
K2P	12	-1792.2492	3661.4991	0.0000	1.0000
SYMG	17	-1778.8855	3666.8555	0.0000	1.0000
SYMI	17	-1779.6986	3668.4816	0.0000	1.0000
SYMIG	18	-1778.8766	3673.2544	0.0000	1.0000
SYM	16	-1789.1823	3681.0323	0.0000	1.0000
F81G	15	-1798.4852	3693.2215	0.0000	1.0000
F81I	15	-1799.2194	3694.6897	0.0000	1.0000
F81IG	16	-1798.4826	3699.6329	0.0000	1.0000
F81	14	-1807.1768	3704.1879	0.0000	1.0000
JC69G	12	-1822.1161	3721.2330	0.0000	1.0000
JC69I	12	-1822.7881	3722.5770	0.0000	1.0000
JC69IG	13	-1822.1118	3727.6412	0.0000	1.0000
JC69	11	-1831.3345	3733.2530	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr22_640.phylip = 1 - 612;
 Partition Dummy = 1:591-tomodel-phylip/chr22_640.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr22_640.phylip = 1 - 612;
 Partition Dummy = 1:591-tomodel-phylip/chr22_640.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr22_640.phylip = 1 - 612;
 Partition Dummy = 1:591-tomodel-phylip/chr22_640.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

