
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:30 04/04/2011

Input data from file "591-tomodel-phylip/chr1_8696.phylip" (7 taxa, 1010 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3662.1130	7364.2259	0.4055	0.4055
GTRI	20	-3662.8103	7365.6206	0.2019	0.6075
GTRIG	21	-3661.8673	7365.7346	0.1907	0.7982
HKYG	16	-3667.5946	7367.1893	0.0922	0.8904
HKYI	16	-3667.9680	7367.9360	0.0634	0.9538
HKYIG	17	-3667.2852	7368.5704	0.0462	1.0000
K2PI	13	-3705.1487	7436.2974	0.0000	1.0000
K2PG	13	-3705.5961	7437.1922	0.0000	1.0000
K2PIG	14	-3704.9070	7437.8140	0.0000	1.0000
SYMI	17	-3703.8371	7441.6743	0.0000	1.0000
SYMG	17	-3704.3412	7442.6823	0.0000	1.0000
SYMIG	18	-3703.6103	7443.2206	0.0000	1.0000
GTR	19	-3713.9311	7465.8621	0.0000	1.0000
HKY	15	-3719.5732	7469.1464	0.0000	1.0000
F81I	15	-3752.4821	7534.9642	0.0000	1.0000
F81IG	16	-3752.4219	7536.8439	0.0000	1.0000
F81G	15	-3753.4552	7536.9105	0.0000	1.0000
K2P	12	-3760.3542	7544.7085	0.0000	1.0000
SYM	16	-3759.2012	7550.4024	0.0000	1.0000
JC69I	12	-3782.5390	7589.0780	0.0000	1.0000
JC69IG	13	-3782.5295	7591.0590	0.0000	1.0000
JC69G	12	-3783.7396	7591.4792	0.0000	1.0000
F81	14	-3801.9826	7631.9653	0.0000	1.0000
JC69	11	-3833.9263	7689.8526	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3667.5946	7445.8725	0.5775	0.5775
HKYI	16	-3667.9680	7446.6193	0.3975	0.9750
HKYIG	17	-3667.2852	7452.1714	0.0248	0.9998
GTRG	20	-3662.1130	7462.5800	0.0001	0.9999
GTRI	20	-3662.8103	7463.9747	0.0001	1.0000
GTRIG	21	-3661.8673	7469.0064	0.0000	1.0000
K2PI	13	-3705.1487	7500.2275	0.0000	1.0000
K2PG	13	-3705.5961	7501.1224	0.0000	1.0000
K2PIG	14	-3704.9070	7506.6619	0.0000	1.0000
SYMI	17	-3703.8371	7525.2753	0.0000	1.0000
SYMG	17	-3704.3412	7526.2833	0.0000	1.0000
SYMIG	18	-3703.6103	7531.7393	0.0000	1.0000
HKY	15	-3719.5732	7542.9120	0.0000	1.0000
GTR	19	-3713.9311	7559.2985	0.0000	1.0000
K2P	12	-3760.3542	7603.7210	0.0000	1.0000
F81I	15	-3752.4821	7608.7298	0.0000	1.0000
F81G	15	-3753.4552	7610.6761	0.0000	1.0000
F81IG	16	-3752.4219	7615.5272	0.0000	1.0000
SYM	16	-3759.2012	7629.0857	0.0000	1.0000
JC69I	12	-3782.5390	7648.0904	0.0000	1.0000
JC69G	12	-3783.7396	7650.4917	0.0000	1.0000
JC69IG	13	-3782.5295	7654.9892	0.0000	1.0000
F81	14	-3801.9826	7700.8131	0.0000	1.0000
JC69	11	-3833.9263	7743.9474	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_8696.phylip = 1 - 1010;
 Partition Dummy = 1:591-tomodel-phylip/chr1_8696.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_8696.phylip = 1 - 1010;
 Partition Dummy = 1:591-tomodel-phylip/chr1_8696.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_8696.phylip = 1 - 1010;
 Partition Dummy = 1:591-tomodel-phylip/chr1_8696.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

