
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:28 04/04/2011

Input data from file "591-tomodel-phylip/chr1_5479.phylip" (7 taxa, 855 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2592.7748	5225.5495	0.4106	0.4106
HKYG	16	-2597.2101	5226.4203	0.2657	0.6763
GTRIG	21	-2592.5782	5227.1564	0.1839	0.8602
HKYIG	17	-2597.0028	5228.0057	0.1203	0.9804
HKYI	16	-2600.5080	5233.0161	0.0098	0.9902
GTRI	20	-2596.5150	5233.0300	0.0098	1.0000
K2PG	13	-2644.9894	5315.9788	0.0000	1.0000
K2PIG	14	-2644.6504	5317.3009	0.0000	1.0000
K2PI	13	-2648.5745	5323.1489	0.0000	1.0000
SYMG	17	-2644.8933	5323.7866	0.0000	1.0000
SYMIG	18	-2644.5249	5325.0498	0.0000	1.0000
HKY	15	-2649.3094	5328.6187	0.0000	1.0000
SYMI	17	-2648.5456	5331.0911	0.0000	1.0000
GTR	19	-2647.2648	5332.5296	0.0000	1.0000
F81G	15	-2654.5299	5339.0599	0.0000	1.0000
F81IG	16	-2654.3865	5340.7731	0.0000	1.0000
F81I	15	-2657.1482	5344.2965	0.0000	1.0000
JC69G	12	-2693.9062	5411.8125	0.0000	1.0000
JC69IG	13	-2693.7125	5413.4249	0.0000	1.0000
K2P	12	-2695.7113	5415.4225	0.0000	1.0000
JC69I	12	-2696.6691	5417.3383	0.0000	1.0000
SYM	16	-2695.4949	5422.9898	0.0000	1.0000
F81	14	-2702.9024	5433.8048	0.0000	1.0000
JC69	11	-2741.5017	5505.0034	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2597.2101	5302.4379	0.9266	0.9266
HKYIG	17	-2597.0028	5308.7744	0.0390	0.9656
HKYI	16	-2600.5080	5309.0337	0.0342	0.9999
GTRG	20	-2592.7748	5320.5715	0.0001	1.0000
GTRIG	21	-2592.5782	5326.9296	0.0000	1.0000
GTRI	20	-2596.5150	5328.0520	0.0000	1.0000
K2PG	13	-2644.9894	5377.7431	0.0000	1.0000
K2PIG	14	-2644.6504	5383.8163	0.0000	1.0000
K2PI	13	-2648.5745	5384.9132	0.0000	1.0000
HKY	15	-2649.3094	5399.8853	0.0000	1.0000
SYMG	17	-2644.8933	5404.5553	0.0000	1.0000
F81G	15	-2654.5299	5410.3264	0.0000	1.0000
SYMIG	18	-2644.5249	5410.5696	0.0000	1.0000
SYMI	17	-2648.5456	5411.8598	0.0000	1.0000
F81I	15	-2657.1482	5415.5630	0.0000	1.0000
F81IG	16	-2654.3865	5416.7907	0.0000	1.0000
GTR	19	-2647.2648	5422.8005	0.0000	1.0000
JC69G	12	-2693.9062	5468.8257	0.0000	1.0000
K2P	12	-2695.7113	5472.4358	0.0000	1.0000
JC69I	12	-2696.6691	5474.3515	0.0000	1.0000
JC69IG	13	-2693.7125	5475.1892	0.0000	1.0000
SYM	16	-2695.4949	5499.0074	0.0000	1.0000
F81	14	-2702.9024	5500.3202	0.0000	1.0000
JC69	11	-2741.5017	5557.2655	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_5479.phylip = 1 - 855;
 Partition Dummy = 1:591-tomodel-phylip/chr1_5479.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_5479.phylip = 1 - 855;
 Partition Dummy = 1:591-tomodel-phylip/chr1_5479.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_5479.phylip = 1 - 855;
 Partition Dummy = 1:591-tomodel-phylip/chr1_5479.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

