
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:27 04/04/2011

Input data from file "591-tomodel-phylip/chr1_5437.phylip" (7 taxa, 1152 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2728.0753	5496.1506	0.6176	0.6176
GTRIG	21	-2727.9334	5497.8669	0.2618	0.8794
GTRI	20	-2729.7163	5499.4327	0.1197	0.9991
HKYG	16	-2739.3745	5510.7490	0.0004	0.9995
HKYI	16	-2739.7321	5511.4642	0.0003	0.9998
HKYIG	17	-2739.2610	5512.5221	0.0002	1.0000
GTR	19	-2744.8980	5527.7961	0.0000	1.0000
HKY	15	-2756.0558	5542.1115	0.0000	1.0000
SYMG	17	-2760.7752	5555.5505	0.0000	1.0000
SYMIG	18	-2760.6834	5557.3669	0.0000	1.0000
SYMI	17	-2762.2704	5558.5407	0.0000	1.0000
K2PG	13	-2767.2314	5560.4627	0.0000	1.0000
K2PIG	14	-2767.1536	5562.3072	0.0000	1.0000
K2PI	13	-2769.1143	5564.2287	0.0000	1.0000
SYM	16	-2775.3939	5582.7879	0.0000	1.0000
F81G	15	-2778.8530	5587.7061	0.0000	1.0000
F81I	15	-2779.3779	5588.7557	0.0000	1.0000
F81IG	16	-2778.7513	5589.5026	0.0000	1.0000
K2P	12	-2783.0443	5590.0886	0.0000	1.0000
F81	14	-2791.4599	5610.9198	0.0000	1.0000
JC69G	12	-2803.0714	5630.1429	0.0000	1.0000
JC69IG	13	-2802.3813	5630.7626	0.0000	1.0000
JC69I	12	-2803.5413	5631.0826	0.0000	1.0000
JC69	11	-2815.4618	5652.9237	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2739.3745	5591.5371	0.5534	0.5534
HKYI	16	-2739.7321	5592.2523	0.3870	0.9404
GTRG	20	-2728.0753	5597.1357	0.0337	0.9741
HKYIG	17	-2739.2610	5598.3594	0.0183	0.9923
GTRI	20	-2729.7163	5600.4178	0.0065	0.9989
GTRIG	21	-2727.9334	5603.9012	0.0011	1.0000
HKY	15	-2756.0558	5617.8503	0.0000	1.0000
GTR	19	-2744.8980	5623.7319	0.0000	1.0000
K2PG	13	-2767.2314	5626.1031	0.0000	1.0000
K2PI	13	-2769.1143	5629.8690	0.0000	1.0000
K2PIG	14	-2767.1536	5632.9967	0.0000	1.0000
SYMG	17	-2760.7752	5641.3878	0.0000	1.0000
SYMI	17	-2762.2704	5644.3781	0.0000	1.0000
SYMIG	18	-2760.6834	5648.2535	0.0000	1.0000
K2P	12	-2783.0443	5650.6797	0.0000	1.0000
F81G	15	-2778.8530	5663.4449	0.0000	1.0000
SYM	16	-2775.3939	5663.5760	0.0000	1.0000
F81I	15	-2779.3779	5664.4946	0.0000	1.0000
F81IG	16	-2778.7513	5670.2907	0.0000	1.0000
F81	14	-2791.4599	5681.6093	0.0000	1.0000
JC69G	12	-2803.0714	5690.7339	0.0000	1.0000
JC69I	12	-2803.5413	5691.6737	0.0000	1.0000
JC69IG	13	-2802.3813	5696.4029	0.0000	1.0000
JC69	11	-2815.4618	5708.4655	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_5437.phylip = 1 - 1152;
 Partition Dummy = 1:591-tomodel-phylip/chr1_5437.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_5437.phylip = 1 - 1152;
 Partition Dummy = 1:591-tomodel-phylip/chr1_5437.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_5437.phylip = 1 - 1152;
 Partition Dummy = 1:591-tomodel-phylip/chr1_5437.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

