
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:25 04/04/2011

Input data from file "591-tomodel-phylip/chr1_5277.phylip" (7 taxa, 1222 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-3963.5331	7959.0662	0.5810	0.5810
HKYIG	17	-3963.4804	7960.9608	0.2253	0.8064
HKYI	16	-3964.9036	7961.8071	0.1476	0.9539
GTRG	20	-3962.5748	7965.1495	0.0277	0.9817
GTRIG	21	-3962.5186	7967.0373	0.0108	0.9925
GTRI	20	-3963.8796	7967.7592	0.0075	1.0000
HKY	15	-3998.1351	8026.2703	0.0000	1.0000
GTR	19	-3996.1331	8030.2663	0.0000	1.0000
SYMG	17	-4002.1704	8038.3408	0.0000	1.0000
SYMIG	18	-4002.1518	8040.3035	0.0000	1.0000
K2PG	13	-4007.1558	8040.3115	0.0000	1.0000
SYMI	17	-4003.3481	8040.6962	0.0000	1.0000
K2PIG	14	-4007.1219	8042.2437	0.0000	1.0000
K2PI	13	-4008.3169	8042.6337	0.0000	1.0000
F81G	15	-4017.2005	8064.4010	0.0000	1.0000
F81I	15	-4017.7410	8065.4819	0.0000	1.0000
F81IG	16	-4017.0856	8066.1711	0.0000	1.0000
SYM	16	-4032.1899	8096.3799	0.0000	1.0000
K2P	12	-4037.7041	8099.4082	0.0000	1.0000
F81	14	-4048.0278	8124.0556	0.0000	1.0000
JC69G	12	-4053.7843	8131.5685	0.0000	1.0000
JC69I	12	-4054.2883	8132.5766	0.0000	1.0000
JC69IG	13	-4053.6865	8133.3730	0.0000	1.0000
JC69	11	-4082.9650	8187.9299	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3963.5331	8040.7981	0.7787	0.7787
HKYI	16	-3964.9036	8043.5390	0.1978	0.9765
HKYIG	17	-3963.4804	8047.8010	0.0235	1.0000
GTRG	20	-3962.5748	8067.3144	0.0000	1.0000
GTRI	20	-3963.8796	8069.9241	0.0000	1.0000
GTRIG	21	-3962.5186	8074.3104	0.0000	1.0000
HKY	15	-3998.1351	8102.8939	0.0000	1.0000
K2PG	13	-4007.1558	8106.7187	0.0000	1.0000
K2PI	13	-4008.3169	8109.0409	0.0000	1.0000
K2PIG	14	-4007.1219	8113.7592	0.0000	1.0000
SYMG	17	-4002.1704	8125.1810	0.0000	1.0000
GTR	19	-3996.1331	8127.3229	0.0000	1.0000
SYMI	17	-4003.3481	8127.5363	0.0000	1.0000
SYMIG	18	-4002.1518	8132.2519	0.0000	1.0000
F81G	15	-4017.2005	8141.0247	0.0000	1.0000
F81I	15	-4017.7410	8142.1056	0.0000	1.0000
F81IG	16	-4017.0856	8147.9030	0.0000	1.0000
K2P	12	-4037.7041	8160.7071	0.0000	1.0000
SYM	16	-4032.1899	8178.1118	0.0000	1.0000
JC69G	12	-4053.7843	8192.8674	0.0000	1.0000
JC69I	12	-4054.2883	8193.8756	0.0000	1.0000
F81	14	-4048.0278	8195.5710	0.0000	1.0000
JC69IG	13	-4053.6865	8199.7802	0.0000	1.0000
JC69	11	-4082.9650	8244.1206	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_5277.phylip = 1 - 1222;
 Partition Dummy = 1:591-tomodel-phylip/chr1_5277.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_5277.phylip = 1 - 1222;
 Partition Dummy = 1:591-tomodel-phylip/chr1_5277.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_5277.phylip = 1 - 1222;
 Partition Dummy = 1:591-tomodel-phylip/chr1_5277.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

