
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:29 04/04/2011

Input data from file "591-tomodel-phylip/chr1_32397.phylip" (7 taxa, 951 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-3156.8715	6345.7430	0.4233	0.4233
GTRG	20	-3153.3986	6346.7972	0.2499	0.6732
HKYIG	17	-3156.8765	6347.7531	0.1549	0.8282
GTRIG	21	-3153.4006	6348.8012	0.0917	0.9199
HKYI	16	-3158.9910	6349.9820	0.0508	0.9707
GTRI	20	-3155.5434	6351.0867	0.0293	1.0000
HKY	15	-3189.4963	6408.9927	0.0000	1.0000
GTR	19	-3186.3166	6410.6331	0.0000	1.0000
SYMG	17	-3193.3190	6420.6380	0.0000	1.0000
SYMIG	18	-3193.3212	6422.6425	0.0000	1.0000
K2PG	13	-3198.9373	6423.8746	0.0000	1.0000
SYMI	17	-3195.5855	6425.1710	0.0000	1.0000
K2PIG	14	-3198.9512	6425.9024	0.0000	1.0000
K2PI	13	-3201.1511	6428.3022	0.0000	1.0000
F81G	15	-3221.4805	6472.9610	0.0000	1.0000
F81IG	16	-3221.4857	6474.9715	0.0000	1.0000
F81I	15	-3223.5555	6477.1110	0.0000	1.0000
SYM	16	-3226.6786	6485.3571	0.0000	1.0000
K2P	12	-3231.4258	6486.8516	0.0000	1.0000
F81	14	-3250.3350	6528.6700	0.0000	1.0000
JC69G	12	-3256.1729	6536.3458	0.0000	1.0000
JC69IG	13	-3256.1764	6538.3527	0.0000	1.0000
JC69I	12	-3258.3917	6540.7833	0.0000	1.0000
JC69	11	-3285.4420	6592.8840	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3156.8715	6423.4632	0.8678	0.8678
HKYI	16	-3158.9910	6427.7022	0.1042	0.9720
HKYIG	17	-3156.8765	6430.3308	0.0280	1.0000
GTRG	20	-3153.3986	6443.9475	0.0000	1.0000
GTRI	20	-3155.5434	6448.2370	0.0000	1.0000
GTRIG	21	-3153.4006	6450.8090	0.0000	1.0000
HKY	15	-3189.4963	6481.8554	0.0000	1.0000
K2PG	13	-3198.9373	6487.0223	0.0000	1.0000
K2PI	13	-3201.1511	6491.4499	0.0000	1.0000
K2PIG	14	-3198.9512	6493.9076	0.0000	1.0000
GTR	19	-3186.3166	6502.9259	0.0000	1.0000
SYMG	17	-3193.3190	6503.2158	0.0000	1.0000
SYMI	17	-3195.5855	6507.7488	0.0000	1.0000
SYMIG	18	-3193.3212	6510.0778	0.0000	1.0000
K2P	12	-3231.4258	6545.1417	0.0000	1.0000
F81G	15	-3221.4805	6545.8237	0.0000	1.0000
F81I	15	-3223.5555	6549.9737	0.0000	1.0000
F81IG	16	-3221.4857	6552.6917	0.0000	1.0000
SYM	16	-3226.6786	6563.0774	0.0000	1.0000
JC69G	12	-3256.1729	6594.6360	0.0000	1.0000
F81	14	-3250.3350	6596.6752	0.0000	1.0000
JC69I	12	-3258.3917	6599.0735	0.0000	1.0000
JC69IG	13	-3256.1764	6601.5004	0.0000	1.0000
JC69	11	-3285.4420	6646.3167	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_32397.phylip = 1 - 951;
 Partition Dummy = 1:591-tomodel-phylip/chr1_32397.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_32397.phylip = 1 - 951;
 Partition Dummy = 1:591-tomodel-phylip/chr1_32397.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_32397.phylip = 1 - 951;
 Partition Dummy = 1:591-tomodel-phylip/chr1_32397.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

