
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:26 04/04/2011

Input data from file "591-tomodel-phylip/chr1_32215.phylip" (7 taxa, 813 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2279.3315	4599.7235	0.3442	0.3442
GTRI	20	-2279.9848	4601.0301	0.1791	0.5233
HKYG	16	-2284.2246	4601.1326	0.1701	0.6934
GTRIG	21	-2279.1229	4601.4139	0.1478	0.8413
HKYIG	17	-2283.9075	4602.5848	0.0823	0.9236
HKYI	16	-2285.0251	4602.7336	0.0764	1.0000
K2PG	13	-2319.4701	4665.3958	0.0000	1.0000
K2PIG	14	-2318.9984	4666.5231	0.0000	1.0000
HKY	15	-2318.4108	4667.4239	0.0000	1.0000
K2PI	13	-2320.6709	4667.7973	0.0000	1.0000
GTR	19	-2315.2850	4669.5285	0.0000	1.0000
SYMG	17	-2318.8312	4672.4322	0.0000	1.0000
SYMIG	18	-2318.4836	4673.8287	0.0000	1.0000
SYMI	17	-2319.7333	4674.2364	0.0000	1.0000
F81G	15	-2324.0352	4678.6728	0.0000	1.0000
F81IG	16	-2323.6556	4679.9946	0.0000	1.0000
F81I	15	-2325.5507	4681.7037	0.0000	1.0000
JC69G	12	-2353.9714	4732.3328	0.0000	1.0000
K2P	12	-2354.0717	4732.5334	0.0000	1.0000
JC69IG	13	-2353.5528	4733.5612	0.0000	1.0000
JC69I	12	-2355.5544	4735.4988	0.0000	1.0000
SYM	16	-2353.5732	4739.8299	0.0000	1.0000
F81	14	-2356.4707	4741.4676	0.0000	1.0000
JC69	11	-2386.9306	4796.1908	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2279.3315	4598.6629	0.3606	0.3606
GTRI	20	-2279.9848	4599.9695	0.1876	0.5482
GTRIG	21	-2279.1229	4600.2458	0.1634	0.7116
HKYG	16	-2284.2246	4600.4492	0.1476	0.8592
HKYIG	17	-2283.9075	4601.8150	0.0746	0.9337
HKYI	16	-2285.0251	4602.0502	0.0663	1.0000
K2PG	13	-2319.4701	4664.9402	0.0000	1.0000
K2PIG	14	-2318.9984	4665.9968	0.0000	1.0000
HKY	15	-2318.4108	4666.8216	0.0000	1.0000
K2PI	13	-2320.6709	4667.3417	0.0000	1.0000
GTR	19	-2315.2850	4668.5701	0.0000	1.0000
SYMG	17	-2318.8312	4671.6624	0.0000	1.0000
SYMIG	18	-2318.4836	4672.9672	0.0000	1.0000
SYMI	17	-2319.7333	4673.4666	0.0000	1.0000
F81G	15	-2324.0352	4678.0705	0.0000	1.0000
F81IG	16	-2323.6556	4679.3112	0.0000	1.0000
F81I	15	-2325.5507	4681.1014	0.0000	1.0000
JC69G	12	-2353.9714	4731.9428	0.0000	1.0000
K2P	12	-2354.0717	4732.1434	0.0000	1.0000
JC69IG	13	-2353.5528	4733.1056	0.0000	1.0000
JC69I	12	-2355.5544	4735.1088	0.0000	1.0000
SYM	16	-2353.5732	4739.1465	0.0000	1.0000
F81	14	-2356.4707	4740.9413	0.0000	1.0000
JC69	11	-2386.9306	4795.8612	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2284.2246	4675.6609	0.6677	0.6677
HKYI	16	-2285.0251	4677.2619	0.2999	0.9676
HKYIG	17	-2283.9075	4681.7274	0.0322	0.9998
GTRG	20	-2279.3315	4692.6775	0.0001	0.9999
GTRI	20	-2279.9848	4693.9841	0.0001	1.0000
GTRIG	21	-2279.1229	4698.9612	0.0000	1.0000
K2PG	13	-2319.4701	4726.0497	0.0000	1.0000
K2PI	13	-2320.6709	4728.4512	0.0000	1.0000
K2PIG	14	-2318.9984	4731.8070	0.0000	1.0000
HKY	15	-2318.4108	4737.3326	0.0000	1.0000
F81G	15	-2324.0352	4748.5815	0.0000	1.0000
SYMG	17	-2318.8312	4751.5748	0.0000	1.0000
F81I	15	-2325.5507	4751.6124	0.0000	1.0000
SYMI	17	-2319.7333	4753.3790	0.0000	1.0000
F81IG	16	-2323.6556	4754.5229	0.0000	1.0000
SYMIG	18	-2318.4836	4757.5804	0.0000	1.0000
GTR	19	-2315.2850	4757.8840	0.0000	1.0000
JC69G	12	-2353.9714	4788.3515	0.0000	1.0000
K2P	12	-2354.0717	4788.5522	0.0000	1.0000
JC69I	12	-2355.5544	4791.5176	0.0000	1.0000
JC69IG	13	-2353.5528	4794.2151	0.0000	1.0000
F81	14	-2356.4707	4806.7516	0.0000	1.0000
SYM	16	-2353.5732	4814.3582	0.0000	1.0000
JC69	11	-2386.9306	4847.5692	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_32215.phylip = 1 - 813;
 Partition Dummy = 1:591-tomodel-phylip/chr1_32215.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_32215.phylip = 1 - 813;
 Partition Dummy = 1:591-tomodel-phylip/chr1_32215.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_32215.phylip = 1 - 813;
 Partition Dummy = 1:591-tomodel-phylip/chr1_32215.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

