
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:25 04/04/2011

Input data from file "591-tomodel-phylip/chr1_31767.phylip" (7 taxa, 1118 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYI


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-3724.3478	7488.6956	0.4925	0.4925
GTRG	20	-3724.9075	7489.8150	0.2814	0.7739
GTRIG	21	-3724.2903	7490.5805	0.1919	0.9658
HKYI	16	-3731.6940	7495.3881	0.0173	0.9831
HKYG	16	-3732.2339	7496.4678	0.0101	0.9932
HKYIG	17	-3731.6343	7497.2685	0.0068	1.0000
GTR	19	-3744.5024	7527.0047	0.0000	1.0000
HKY	15	-3751.8687	7533.7375	0.0000	1.0000
SYMI	17	-3756.2687	7546.5375	0.0000	1.0000
SYMG	17	-3756.9175	7547.8349	0.0000	1.0000
K2PI	13	-3761.0418	7548.0836	0.0000	1.0000
SYMIG	18	-3756.2270	7548.4540	0.0000	1.0000
K2PG	13	-3761.5027	7549.0054	0.0000	1.0000
K2PIG	14	-3760.9639	7549.9277	0.0000	1.0000
SYM	16	-3777.2445	7586.4891	0.0000	1.0000
K2P	12	-3782.0096	7588.0191	0.0000	1.0000
F81I	15	-3823.0959	7676.1917	0.0000	1.0000
F81G	15	-3823.5991	7677.1982	0.0000	1.0000
F81IG	16	-3823.0432	7678.0864	0.0000	1.0000
F81	14	-3841.7165	7711.4331	0.0000	1.0000
JC69I	12	-3848.0293	7720.0587	0.0000	1.0000
JC69G	12	-3848.5514	7721.1027	0.0000	1.0000
JC69IG	13	-3847.9783	7721.9565	0.0000	1.0000
JC69	11	-3867.1135	7756.2269	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-3731.6940	7575.6968	0.6186	0.6186
HKYG	16	-3732.2339	7576.7766	0.3605	0.9791
HKYIG	17	-3731.6343	7582.5966	0.0196	0.9988
GTRI	20	-3724.3478	7589.0815	0.0008	0.9995
GTRG	20	-3724.9075	7590.2010	0.0004	1.0000
GTRIG	21	-3724.2903	7595.9857	0.0000	1.0000
HKY	15	-3751.8687	7609.0269	0.0000	1.0000
K2PI	13	-3761.0418	7613.3344	0.0000	1.0000
K2PG	13	-3761.5027	7614.2562	0.0000	1.0000
K2PIG	14	-3760.9639	7620.1979	0.0000	1.0000
GTR	19	-3744.5024	7622.3714	0.0000	1.0000
SYMI	17	-3756.2687	7631.8655	0.0000	1.0000
SYMG	17	-3756.9175	7633.1630	0.0000	1.0000
SYMIG	18	-3756.2270	7638.8013	0.0000	1.0000
K2P	12	-3782.0096	7648.2507	0.0000	1.0000
SYM	16	-3777.2445	7666.7978	0.0000	1.0000
F81I	15	-3823.0959	7751.4811	0.0000	1.0000
F81G	15	-3823.5991	7752.4877	0.0000	1.0000
F81IG	16	-3823.0432	7758.3951	0.0000	1.0000
JC69I	12	-3848.0293	7780.2902	0.0000	1.0000
JC69G	12	-3848.5514	7781.3343	0.0000	1.0000
F81	14	-3841.7165	7781.7032	0.0000	1.0000
JC69IG	13	-3847.9783	7787.2074	0.0000	1.0000
JC69	11	-3867.1135	7811.4392	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_31767.phylip = 1 - 1118;
 Partition Dummy = 1:591-tomodel-phylip/chr1_31767.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_31767.phylip = 1 - 1118;
 Partition Dummy = 1:591-tomodel-phylip/chr1_31767.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_31767.phylip = 1 - 1118;
 Partition Dummy = 1:591-tomodel-phylip/chr1_31767.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


-------------------------------------------------------------
End of Output

