
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:33 04/04/2011

Input data from file "591-tomodel-phylip/chr1_31083.phylip" (7 taxa, 913 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2491.6532	5023.3065	0.5275	0.5275
GTRIG	21	-2491.6439	5025.2879	0.1959	0.7234
GTRI	20	-2493.3009	5026.6017	0.1016	0.8250
HKYIG	17	-2496.6175	5027.2350	0.0740	0.8989
HKYG	16	-2498.3026	5028.6052	0.0373	0.9362
HKYI	16	-2498.3750	5028.7501	0.0347	0.9709
K2PIG	14	-2501.7576	5031.5151	0.0087	0.9796
SYMG	17	-2498.7617	5031.5235	0.0087	0.9883
K2PG	13	-2503.7465	5033.4931	0.0032	0.9915
SYMIG	18	-2498.7605	5033.5209	0.0032	0.9947
K2PI	13	-2503.7640	5033.5280	0.0032	0.9979
SYMI	17	-2500.1852	5034.3704	0.0021	1.0000
GTR	19	-2506.9263	5051.8526	0.0000	1.0000
HKY	15	-2512.1839	5054.3678	0.0000	1.0000
K2P	12	-2517.2985	5058.5971	0.0000	1.0000
SYM	16	-2513.4125	5058.8250	0.0000	1.0000
F81G	15	-2534.9484	5099.8967	0.0000	1.0000
F81I	15	-2535.0949	5100.1898	0.0000	1.0000
F81IG	16	-2534.9637	5101.9275	0.0000	1.0000
JC69G	12	-2539.1962	5102.3923	0.0000	1.0000
JC69I	12	-2539.3326	5102.6653	0.0000	1.0000
JC69IG	13	-2539.2118	5104.4236	0.0000	1.0000
F81	14	-2547.2367	5122.4734	0.0000	1.0000
JC69	11	-2551.4507	5124.9014	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-2503.7465	5096.1107	0.4459	0.4459
K2PI	13	-2503.7640	5096.1455	0.4382	0.8841
K2PIG	14	-2501.7576	5098.9494	0.1079	0.9920
HKYG	16	-2498.3026	5105.6730	0.0037	0.9957
HKYI	16	-2498.3750	5105.8179	0.0035	0.9992
HKYIG	17	-2496.6175	5109.1195	0.0007	0.9999
SYMG	17	-2498.7617	5113.4080	0.0001	1.0000
SYMI	17	-2500.1852	5116.2549	0.0000	1.0000
K2P	12	-2517.2985	5116.3979	0.0000	1.0000
GTRG	20	-2491.6532	5119.6412	0.0000	1.0000
SYMIG	18	-2498.7605	5120.2222	0.0000	1.0000
GTRI	20	-2493.3009	5122.9364	0.0000	1.0000
GTRIG	21	-2491.6439	5126.4393	0.0000	1.0000
HKY	15	-2512.1839	5126.6189	0.0000	1.0000
SYM	16	-2513.4125	5135.8928	0.0000	1.0000
GTR	19	-2506.9263	5143.3706	0.0000	1.0000
JC69G	12	-2539.1962	5160.1931	0.0000	1.0000
JC69I	12	-2539.3326	5160.4661	0.0000	1.0000
JC69IG	13	-2539.2118	5167.0412	0.0000	1.0000
F81G	15	-2534.9484	5172.1477	0.0000	1.0000
F81I	15	-2535.0949	5172.4409	0.0000	1.0000
JC69	11	-2551.4507	5177.8855	0.0000	1.0000
F81IG	16	-2534.9637	5178.9953	0.0000	1.0000
F81	14	-2547.2367	5189.9077	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_31083.phylip = 1 - 913;
 Partition Dummy = 1:591-tomodel-phylip/chr1_31083.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_31083.phylip = 1 - 913;
 Partition Dummy = 1:591-tomodel-phylip/chr1_31083.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_31083.phylip = 1 - 913;
 Partition Dummy = 1:591-tomodel-phylip/chr1_31083.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

