
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:32 04/04/2011

Input data from file "591-tomodel-phylip/chr1_29817.phylip" (7 taxa, 816 characters)

Minimum AIC  model: GTRG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYG	16	-2474.2496	4981.1801	0.2588	0.2588
GTRG	20	-2470.0799	4981.2165	0.2541	0.5128
HKYI	16	-2474.6459	4981.9727	0.1741	0.6869
GTRI	20	-2470.8673	4982.7911	0.1156	0.8026
HKYIG	17	-2474.1433	4983.0536	0.1014	0.9040
GTRIG	21	-2469.9993	4983.1623	0.0960	1.0000
HKY	15	-2494.8343	5020.2686	0.0000	1.0000
GTR	19	-2491.2886	5021.5320	0.0000	1.0000
K2PG	13	-2505.3933	5037.2404	0.0000	1.0000
K2PI	13	-2505.8217	5038.0973	0.0000	1.0000
SYMG	17	-2501.7639	5038.2947	0.0000	1.0000
K2PIG	14	-2505.3509	5039.2262	0.0000	1.0000
SYMI	17	-2502.4093	5039.5855	0.0000	1.0000
SYMIG	18	-2501.7365	5040.3312	0.0000	1.0000
K2P	12	-2523.7217	5071.8320	0.0000	1.0000
SYM	16	-2520.1762	5073.0333	0.0000	1.0000
F81G	15	-2532.8641	5096.3281	0.0000	1.0000
F81I	15	-2533.5705	5097.7411	0.0000	1.0000
F81IG	16	-2532.8342	5098.3494	0.0000	1.0000
F81	14	-2550.7716	5130.0676	0.0000	1.0000
JC69G	12	-2566.5936	5157.5757	0.0000	1.0000
JC69I	12	-2567.1021	5158.5928	0.0000	1.0000
JC69IG	13	-2566.5764	5159.6066	0.0000	1.0000
JC69	11	-2583.2829	5188.8942	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2470.0799	4980.1599	0.2769	0.2769
HKYG	16	-2474.2496	4980.4992	0.2337	0.5107
HKYI	16	-2474.6459	4981.2919	0.1572	0.6679
GTRI	20	-2470.8673	4981.7345	0.1260	0.7939
GTRIG	21	-2469.9993	4981.9986	0.1104	0.9044
HKYIG	17	-2474.1433	4982.2867	0.0956	1.0000
HKY	15	-2494.8343	5019.6686	0.0000	1.0000
GTR	19	-2491.2886	5020.5772	0.0000	1.0000
K2PG	13	-2505.3933	5036.7866	0.0000	1.0000
SYMG	17	-2501.7639	5037.5277	0.0000	1.0000
K2PI	13	-2505.8217	5037.6435	0.0000	1.0000
K2PIG	14	-2505.3509	5038.7018	0.0000	1.0000
SYMI	17	-2502.4093	5038.8186	0.0000	1.0000
SYMIG	18	-2501.7365	5039.4730	0.0000	1.0000
K2P	12	-2523.7217	5071.4435	0.0000	1.0000
SYM	16	-2520.1762	5072.3524	0.0000	1.0000
F81G	15	-2532.8641	5095.7281	0.0000	1.0000
F81I	15	-2533.5705	5097.1411	0.0000	1.0000
F81IG	16	-2532.8342	5097.6685	0.0000	1.0000
F81	14	-2550.7716	5129.5433	0.0000	1.0000
JC69G	12	-2566.5936	5157.1872	0.0000	1.0000
JC69I	12	-2567.1021	5158.2042	0.0000	1.0000
JC69IG	13	-2566.5764	5159.1528	0.0000	1.0000
JC69	11	-2583.2829	5188.5658	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2474.2496	5055.7699	0.5842	0.5842
HKYI	16	-2474.6459	5056.5625	0.3930	0.9772
HKYIG	17	-2474.1433	5062.2617	0.0227	0.9999
GTRG	20	-2470.0799	5074.2482	0.0001	1.0000
GTRI	20	-2470.8673	5075.8228	0.0000	1.0000
GTRIG	21	-2469.9993	5080.7913	0.0000	1.0000
HKY	15	-2494.8343	5090.2349	0.0000	1.0000
K2PG	13	-2505.3933	5097.9440	0.0000	1.0000
K2PI	13	-2505.8217	5098.8008	0.0000	1.0000
K2PIG	14	-2505.3509	5104.5636	0.0000	1.0000
GTR	19	-2491.2886	5109.9611	0.0000	1.0000
SYMG	17	-2501.7639	5117.5028	0.0000	1.0000
SYMI	17	-2502.4093	5118.7936	0.0000	1.0000
SYMIG	18	-2501.7365	5124.1524	0.0000	1.0000
K2P	12	-2523.7217	5127.8965	0.0000	1.0000
SYM	16	-2520.1762	5147.6230	0.0000	1.0000
F81G	15	-2532.8641	5166.2943	0.0000	1.0000
F81I	15	-2533.5705	5167.7073	0.0000	1.0000
F81IG	16	-2532.8342	5172.9391	0.0000	1.0000
F81	14	-2550.7716	5195.4051	0.0000	1.0000
JC69G	12	-2566.5936	5213.6402	0.0000	1.0000
JC69I	12	-2567.1021	5214.6572	0.0000	1.0000
JC69IG	13	-2566.5764	5220.3102	0.0000	1.0000
JC69	11	-2583.2829	5240.3144	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_29817.phylip = 1 - 816;
 Partition Dummy = 1:591-tomodel-phylip/chr1_29817.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_29817.phylip = 1 - 816;
 Partition Dummy = 1:591-tomodel-phylip/chr1_29817.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_29817.phylip = 1 - 816;
 Partition Dummy = 1:591-tomodel-phylip/chr1_29817.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

